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MC03g0111 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0111
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionZinc finger CCCH domain-containing protein 40-like
Genome locationMC03:1729773..1729997
RNA-Seq ExpressionMC03g0111
SyntenyMC03g0111
Gene Ontology termsGO:0000974 - Prp19 complex (cellular component)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0071007 - U2-type catalytic step 2 spliceosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0017070 - U6 snRNA binding (molecular function)
GO:0036002 - pre-mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039171 - Pre-mRNA-splicing factor Cwc2/Slt11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW52573.1 hypothetical protein EUGRSUZ_J019482, partial [Eucalyptus grandis]2.15e-3894.52Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

PKI46146.1 hypothetical protein CRG98_033479, partial [Punica granatum]1.83e-3891.78Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDARV EQDLRD+FYAHG IES+RMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_011648901.1 zinc finger CCCH domain-containing protein 40 [Cucumis sativus]3.78e-3895.89Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+EQDLRDNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_022150908.1 zinc finger CCCH domain-containing protein 49 [Momordica charantia]4.79e-44100Show/hide
Query:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
Subjt:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_038890333.1 zinc finger CCCH domain-containing protein 40-like [Benincasa hispida]3.22e-3895.89Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+EQDLRDNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

TrEMBL top hitse value%identityAlignment
A0A059AFG1 Uncharacterized protein (Fragment)1.04e-3894.52Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A0A0LGN2 Uncharacterized protein1.83e-3895.89Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+EQDLRDNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A2I0IRT0 RRM domain-containing protein (Fragment)8.84e-3991.78Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDARV EQDLRD+FYAHG IES+RMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A6J1DAQ4 zinc finger CCCH domain-containing protein 492.32e-44100Show/hide
Query:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
Subjt:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

F6GUU9 RRM domain-containing protein6.76e-3991.78Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDARV EQDLRD+FYAHG IES+RMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

SwissProt top hitse value%identityAlignment
Q5SNN4 Zinc finger CCCH domain-containing protein 405.8e-3084.93Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEMPSL PP+DESIRTLY+GGL+ R+ EQDLRD FYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

Q6Z358 Zinc finger CCCH domain-containing protein 498.9e-3186.3Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL+KAGEMPSL PP+DESIRTLY+GGLD+RV EQDLRD FYAHG IE+IRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

Q9FL40 Zinc finger CCCH domain-containing protein 532.1e-1969.35Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ
        VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D+FYA+G +ESIR++ +
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ

Q9LNV5 Zinc finger CCCH domain-containing protein 44.3e-2571.23Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ EQD+RD FYAHG IESIR++  +ACAF+TYT+R
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

Q9ZW36 Zinc finger CCCH domain-containing protein 251.7e-2676.71Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV EQD+RD FYAHG IESIR++ ++ACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

Arabidopsis top hitse value%identityAlignment
AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain3.1e-2671.23Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ EQD+RD FYAHG IESIR++  +ACAF+TYT+R
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

AT2G29580.1 CCCH-type zinc fingerfamily protein with RNA-binding domain1.2e-2776.71Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV EQD+RD FYAHG IESIR++ ++ACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR

AT5G04210.1 CCCH-type zinc fingerfamily protein with RNA-binding domain7.3e-1248.05Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGL-DARVAEQDLRDNFYAHGGIESIRMVLQR---ACAFLTYTTR
        + +P  L++L +A     L+PPED+SI+TLY+  L ++ V EQD+RD+F  +G IESI +   R    CAFLTYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGL-DARVAEQDLRDNFYAHGGIESIRMVLQR---ACAFLTYTTR

AT5G07060.1 CCCH-type zinc fingerfamily protein with RNA-binding domain1.5e-2069.35Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ
        VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D+FYA+G +ESIR++ +
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ

AT5G07060.2 CCCH-type zinc fingerfamily protein with RNA-binding domain1.5e-2069.35Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ
        VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D+FYA+G +ESIR++ +
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAGGGTTAATGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAAATGCCTTCTCTAGAACCTCCGGAGGATGAGAGCATTAGAACCTTGTATGTGGGCGGTCT
AGATGCTCGAGTTGCCGAGCAAGATCTTCGGGACAACTTTTATGCTCATGGTGGAATTGAATCCATCAGAATGGTGCTACAGCGAGCATGTGCATTTTTAACCTACACCA
CCAGA
mRNA sequenceShow/hide mRNA sequence
CTCAGGGTTAATGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAAATGCCTTCTCTAGAACCTCCGGAGGATGAGAGCATTAGAACCTTGTATGTGGGCGGTCT
AGATGCTCGAGTTGCCGAGCAAGATCTTCGGGACAACTTTTATGCTCATGGTGGAATTGAATCCATCAGAATGGTGCTACAGCGAGCATGTGCATTTTTAACCTACACCA
CCAGA
Protein sequenceShow/hide protein sequence
LRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVAEQDLRDNFYAHGGIESIRMVLQRACAFLTYTTR