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MC03g0140 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0140
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionElongin-C
Genome locationMC03:2390956..2392459
RNA-Seq ExpressionMC03g0140
SyntenyMC03g0140
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR039948 - Elongin-C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]3.71e-6498.98Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]1.29e-64100Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]3.06e-6397.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_031741205.1 LOW QUALITY PROTEIN: elongin-C [Cucumis sativus]1.25e-6296.94Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNL F SGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]1.07e-6398.98Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hitse value%identityAlignment
A0A0A0LY44 Elongin-C1.80e-6498.98Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C1.80e-6498.98Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C6.27e-65100Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C1.48e-6397.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C7.06e-6295.92Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hitse value%identityAlignment
P83940 Elongin-C1.0e-1847.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C1.0e-1847.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C1.0e-1847.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C1.0e-1847.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C1.7e-1644.21Show/hide
Query:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y H+N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hitse value%identityAlignment
AT5G59140.1 BTB/POZ domain-containing protein9.3e-3980.85Show/hide
Query:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQYF+W+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATGAAGAAGGAAGAGACAGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTCATTCACAAGGATGCAGCCATGGTTTCTCAGACAATTCGAAACATGCTTACATC
GCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTCCCTGAGATTAGCACCACCATACTCGAGAAGATTTGCCAATATTTTCACTGGAATCTACAATTCGCCA
GTGGAAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACCCTTGAGTTGATGATGGCTGCCAACTATCTCCATACA
mRNA sequenceShow/hide mRNA sequence
AAAATGAAGAAGGAAGAGACAGTAAAATTGATCAGCGCCGAGGGTTTCGAGTTCGTCATTCACAAGGATGCAGCCATGGTTTCTCAGACAATTCGAAACATGCTTACATC
GCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTCCCTGAGATTAGCACCACCATACTCGAGAAGATTTGCCAATATTTTCACTGGAATCTACAATTCGCCA
GTGGAAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACCCTTGAGTTGATGATGGCTGCCAACTATCTCCATACA
Protein sequenceShow/hide protein sequence
KMKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT