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MC03g0144 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0144
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiondouble-stranded RNA-binding protein 1-like isoform X2
Genome locationMC03:2559167..2559493
RNA-Seq ExpressionMC03g0144
SyntenyMC03g0144
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057205.1 double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa]9.49e-2958.72Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K+KLQELC RKS KLP  SV KQGQDHDPRFEA V +D K+F S T  KSSK+AQN+  KLAFD FSLPS    PQP        +Q  PQP+ P SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  PLPKHLHCI
          PK +  I
Subjt:  PLPKHLHCI

XP_022149387.1 double-stranded RNA-binding protein 1-like isoform X1 [Momordica charantia]2.78e-5076.07Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP
        MYKSKLQELC RKSCKLP  SVFKQGQDHDPRFEAIV ++DKEFRSQT CKSSK+AQNE  KLAFD FSLPSSPSCPQP  QP        PLQ +Q+RP
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP

Query:  QPLFPISSPLPKHLHCI
        QPLFP+SSP P+ LHCI
Subjt:  QPLFPISSPLPKHLHCI

XP_022149390.1 double-stranded RNA-binding protein 1-like isoform X2 [Momordica charantia]2.36e-5076.07Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP
        MYKSKLQELC RKSCKLP  SVFKQGQDHDPRFEAIV ++DKEFRSQT CKSSK+AQNE  KLAFD FSLPSSPSCPQP  QP        PLQ +Q+RP
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP

Query:  QPLFPISSPLPKHLHCI
        QPLFP+SSP P+ LHCI
Subjt:  QPLFPISSPLPKHLHCI

XP_038904852.1 double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida]1.29e-3262.39Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K++LQELC RKS +LP  SV KQGQDHDPRFEA V +D K+F S   CKSSK+AQNE  K+AFD FSLPSSP       QPPLQ + + PQPL P SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  PLPKHLHCI
        P PK + CI
Subjt:  PLPKHLHCI

XP_038904854.1 double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida]1.13e-3262.39Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K++LQELC RKS +LP  SV KQGQDHDPRFEA V +D K+F S   CKSSK+AQNE  K+AFD FSLPSSP       QPPLQ + + PQPL P SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  PLPKHLHCI
        P PK + CI
Subjt:  PLPKHLHCI

TrEMBL top hitse value%identityAlignment
A0A0A0LI49 DRBM domain-containing protein4.29e-3061.47Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K+KLQELC RKS KLP  SV KQGQDHDPRFEA V +D K+F S T  KSSK+AQN+  KLAFD FSLPS P       QPP   EQ  PQPL P SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  PLPKHLHCI
          PK +  I
Subjt:  PLPKHLHCI

A0A5A7UUH6 Double-stranded RNA-binding protein 1 isoform X24.60e-2958.72Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K+KLQELC RKS KLP  SV KQGQDHDPRFEA V +D K+F S T  KSSK+AQN+  KLAFD FSLPS    PQP        +Q  PQP+ P SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  PLPKHLHCI
          PK +  I
Subjt:  PLPKHLHCI

A0A6J1D5K6 double-stranded RNA-binding protein 1-like isoform X21.14e-5076.07Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP
        MYKSKLQELC RKSCKLP  SVFKQGQDHDPRFEAIV ++DKEFRSQT CKSSK+AQNE  KLAFD FSLPSSPSCPQP  QP        PLQ +Q+RP
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP

Query:  QPLFPISSPLPKHLHCI
        QPLFP+SSP P+ LHCI
Subjt:  QPLFPISSPLPKHLHCI

A0A6J1D6X0 double-stranded RNA-binding protein 1-like isoform X11.35e-5076.07Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP
        MYKSKLQELC RKSCKLP  SVFKQGQDHDPRFEAIV ++DKEFRSQT CKSSK+AQNE  KLAFD FSLPSSPSCPQP  QP        PLQ +Q+RP
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQP--------PLQLEQNRP

Query:  QPLFPISSPLPKHLHCI
        QPLFP+SSP P+ LHCI
Subjt:  QPLFPISSPLPKHLHCI

A0A6J1IZS6 double-stranded RNA-binding protein 1-like isoform X22.55e-2761.39Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS
        M+K+KLQELC RKS +LP  SV KQGQDHDPRFEA V +   +F SQT CKSSK+AQN+  KLAFD FSLPSSP           +LE   PQP FP SS
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISS

Query:  P
        P
Subjt:  P

SwissProt top hitse value%identityAlignment
Q5N8Z0 Double-stranded RNA-binding protein 11.4e-0536.89Show/hide
Query:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRS-QTLCKSSKKAQNEVVKLAFD-LFSLPSSPSCP----QPHLQPPLQLEQNRPQP
        MYKS+LQELC ++    P  +    G  H P F A V+++  EFR+ +   +S+K+A N   K AFD L SLP  P  P    Q   +  LQ+   +   
Subjt:  MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRS-QTLCKSSKKAQNEVVKLAFD-LFSLPSSPSCP----QPHLQPPLQLEQNRPQP

Query:  LFP
        L P
Subjt:  LFP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAAAGCAAGCTTCAAGAGCTTTGTATGCGGAAATCATGCAAGTTACCGAACAATTCCGTGTTTAAACAAGGTCAAGATCATGACCCGCGCTTTGAAGCCATAGT
CGCTATTGATGACAAGGAATTTCGCTCTCAGACTCTCTGTAAGTCTTCTAAGAAAGCTCAAAATGAGGTAGTCAAACTTGCTTTTGACTTATTCTCTCTTCCTTCCTCAC
CCTCTTGTCCTCAACCACATCTGCAACCACCATTGCAACTAGAGCAAAATCGCCCCCAACCACTTTTTCCAATATCATCTCCTCTACCAAAACATCTTCATTGCATT
mRNA sequenceShow/hide mRNA sequence
ATGTACAAAAGCAAGCTTCAAGAGCTTTGTATGCGGAAATCATGCAAGTTACCGAACAATTCCGTGTTTAAACAAGGTCAAGATCATGACCCGCGCTTTGAAGCCATAGT
CGCTATTGATGACAAGGAATTTCGCTCTCAGACTCTCTGTAAGTCTTCTAAGAAAGCTCAAAATGAGGTAGTCAAACTTGCTTTTGACTTATTCTCTCTTCCTTCCTCAC
CCTCTTGTCCTCAACCACATCTGCAACCACCATTGCAACTAGAGCAAAATCGCCCCCAACCACTTTTTCCAATATCATCTCCTCTACCAAAACATCTTCATTGCATT
Protein sequenceShow/hide protein sequence
MYKSKLQELCMRKSCKLPNNSVFKQGQDHDPRFEAIVAIDDKEFRSQTLCKSSKKAQNEVVKLAFDLFSLPSSPSCPQPHLQPPLQLEQNRPQPLFPISSPLPKHLHCI