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MC03g0153 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0153
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationMC03:2673931..2674337
RNA-Seq ExpressionMC03g0153
SyntenyMC03g0153
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012487873.1 PREDICTED: uncharacterized protein LOC105801085 [Gossypium raimondii]1.63e-1331.11Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARLVPR-VLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP   +K N +A  D +  +S  G+V RD++  +  +    +  + SP +A+ LA+R+A++    +  R ++ E DSL +I+  R ++  + ++   
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARLVPR-VLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        +++I  L SSF    F HVPR  N +AH++AK +L
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.16e-1539.55Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETLV
        W  P  GV+K NT+A        SG+GV+ R+    +  AM+      +PL AK+LA RE + LA RL V RV+ E+DSL  + LI     W+GE  + V
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETLV

Query:  LNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
         +IRA A  F    F HV RE+N VA+ + + ++
Subjt:  LNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

XP_030938250.1 uncharacterized protein LOC115963402 [Quercus lobata]3.40e-1339.55Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP G++K N +    S    +G+GV+ RD    + AA+  + P   S  + +V+A R A+ LA  L   RV+ E DS  VIQ IR           L
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRS
        + +I AL+ SFS  SFLHV R  N VAH +A+RS
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRS

XP_030970368.1 uncharacterized protein LOC115990707 [Quercus lobata]9.82e-1439.39Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W+ PP G +K NT+A       K  IGVV RD+   +  A     P   S   ++ LA ++ V LAA L V   +FESD+L +I  I  ++   GE+  +
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAK
        + NIR L + FS  SF H+ RE N VAH +AK
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAK

XP_042983235.1 uncharacterized protein LOC122312641 [Carya illinoinensis]1.09e-1333.33Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        WS PP    K N +A  D    K GIGV+ RD +  + A++ ++      PL  +  A   A  L A L +  ++ E D+L V+Q ++G  E    +  +
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        + ++++L S F  +S  HVPRE N +AH +AK +L
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

TrEMBL top hitse value%identityAlignment
A0A251NT15 RNase H domain-containing protein1.83e-1237.04Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRD-DQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W+ PP G LK N +   D    +  +GVV RD D  F+ A   +    +S   A++LA RE V LA  L     +FE DS +V+  I+   +    I T+
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRD-DQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        V +++ L   F S  F   PREANGVAH +A+  L
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

A0A2Z6NX36 Reverse transcriptase domain-containing protein4.52e-1335.56Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLA-ARLVPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP   LKCN +        K GIG+ FRD       A   TFP E++ +  +  A + A+ LA +    RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLA-ARLVPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        +    +L  S ++++  +V R+AN VAH +A+ SL
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

A0A2Z6PPU2 Reverse transcriptase domain-containing protein2.15e-1335.56Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLA-ARLVPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP   LKCN +        K GIG+ FRD+      A   TFP E++    +  A + A+ LA +    RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLATREAVRLA-ARLVPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        +    +L  S ++++  +V R+AN VAH +A+ SL
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

A0A6J1DZK3 uncharacterized protein LOC1110249681.05e-1539.55Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETLV
        W  P  GV+K NT+A        SG+GV+ R+    +  AM+      +PL AK+LA RE + LA RL V RV+ E+DSL  + LI     W+GE  + V
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETLV

Query:  LNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
         +IRA A  F    F HV RE+N VA+ + + ++
Subjt:  LNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

A0A7J8YQW2 Uncharacterized protein1.97e-1331.11Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARLVPR-VLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP  ++K N +A  D +  +S  G+V R++++ +  +    +  + SP +A+ LA+R+A++    +  R ++ E DSL +I+  R ++  + ++ T 
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARLVPR-VLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL
        + +I  L SSF    F HVPR  N +AH++AK +L
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0929.2Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP   +KCNT+AT      + GIG + R++   +        P   + L A++ A R AV   +R    R++FESD+  ++ L+  D  W   ++  
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLEW
        + +I+ L   F    F   PR  N VA  +A+ S+ +
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLEW

AT4G29090.1 Ribonuclease H-like superfamily protein4.1e-1332.85Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL
        W  PP   +KCNT+AT +    + GIG V R+++  ++       P++ S L A++ A R AV   +R     V+FESDS ++I+++  D  W   ++  
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLATREAVRLAARL-VPRVLFESDSLMVIQLIRGDLEWQGEIETL

Query:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLEW
        + +++ L S F+   F+ +PRE N +A  VA+ SL +
Subjt:  VLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLEW

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0525.18Show/hide
Query:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATF-----PEISPLSAKVLATREAVRLAARLVPRVLFESDSLMVIQLIRGDLEWQGEI
        WS P +  LKCN +A+   R   SG+G + R+ Q  +    +  F      E +  S  + A + +     +   +V+FE D+  + ++I         +
Subjt:  WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATF-----PEISPLSAKVLATREAVRLAARLVPRVLFESDSLMVIQLIRGDLEWQGEI

Query:  ETLVLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLE
        +  +  I++   SF S  F    RE NG A  +AK++++
Subjt:  ETLVLNIRALASSFSSFSFLHVPREANGVAHLVAKRSLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGTCAATGCCTCCAAAAGGGGTCCTTAAATGTAACACTAATGCCACGTGTGACTCTAGAAGAATGAAATCAGGGATCGGGGTTGTCTTTCGAGATGATCAAAATTTCCT
TCAGGCGGCGATGCTAGCAACTTTCCCCGAAATATCCCCTCTCTCGGCTAAAGTGCTCGCGACTCGGGAGGCAGTTAGGCTGGCAGCAAGGTTGGTGCCTCGGGTGTTGT
TTGAATCAGATTCTTTAATGGTAATACAATTGATTCGAGGCGATTTAGAGTGGCAAGGAGAAATTGAAACTTTGGTTCTTAACATTAGGGCTTTGGCTTCTTCGTTCTCT
TCGTTTTCCTTCTTGCATGTGCCAAGGGAAGCGAATGGAGTGGCTCACCTGGTGGCTAAGAGGTCTTTGGAGTGG
mRNA sequenceShow/hide mRNA sequence
TGGTCAATGCCTCCAAAAGGGGTCCTTAAATGTAACACTAATGCCACGTGTGACTCTAGAAGAATGAAATCAGGGATCGGGGTTGTCTTTCGAGATGATCAAAATTTCCT
TCAGGCGGCGATGCTAGCAACTTTCCCCGAAATATCCCCTCTCTCGGCTAAAGTGCTCGCGACTCGGGAGGCAGTTAGGCTGGCAGCAAGGTTGGTGCCTCGGGTGTTGT
TTGAATCAGATTCTTTAATGGTAATACAATTGATTCGAGGCGATTTAGAGTGGCAAGGAGAAATTGAAACTTTGGTTCTTAACATTAGGGCTTTGGCTTCTTCGTTCTCT
TCGTTTTCCTTCTTGCATGTGCCAAGGGAAGCGAATGGAGTGGCTCACCTGGTGGCTAAGAGGTCTTTGGAGTGG
Protein sequenceShow/hide protein sequence
WSMPPKGVLKCNTNATCDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLATREAVRLAARLVPRVLFESDSLMVIQLIRGDLEWQGEIETLVLNIRALASSFS
SFSFLHVPREANGVAHLVAKRSLEW