; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0189 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0189
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationMC03:3540588..3541025
RNA-Seq ExpressionMC03g0189
SyntenyMC03g0189
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583430.1 putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. sororia]7.82e-6061.33Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLD
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA AA G        +TA + T+LFQYGERG+ G+NADCSICLD
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLD

Query:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        EF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_022964750.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]1.97e-5962.16Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEF
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A    GE+R  A  TA + T+LFQYGERG+ G+NADCSICLDEF
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEF

Query:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
         EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_022970579.1 RING-H2 finger protein ATL14-like [Cucurbita maxima]2.87e-6264.47Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSIC
        PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A+ G  GE+RR A  TA + T+LFQYGERG+EG+NADCSIC
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSIC

Query:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        LDEF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_023520573.1 RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]5.51e-6061.33Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLD
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA AA G        +TA + T+LFQYGERG+ G+NADCSICLD
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLD

Query:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        EF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

XP_038895799.1 E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]4.18e-6464.38Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR----------------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEG
        PPP P  L   +LS+LDLDFLN AG+S+LALMIVYFI+TCYE KY  R                +  A+ AG    RR A STA + TKLFQYGE G+ G
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR----------------QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEG

Query:  RNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        +NADCSICLDEFSEG++CRMLPKCKH+FHRFCIDQWLPN+ HCP+CRSPV VRIVYSN S
Subjt:  RNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

TrEMBL top hitse value%identityAlignment
A0A1S3C5T1 RING-H2 finger protein ATL39-like2.02e-5758.33Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S A + T+LFQYG  G + G+
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A5A7VKM2 RING-H2 finger protein ATL39-like2.02e-5758.33Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S A + T+LFQYG  G + G+
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A5D3BEF0 RING-H2 finger protein ATL39-like2.02e-5758.33Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR
        PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R                + A+  G   RR  +S A + T+LFQYG  G + G+
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ--------------TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGR

Query:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS
        NADCSICLDEF+EG++CRMLPKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Subjt:  NADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS

A0A6J1HLQ2 RING-type E3 ubiquitin transferase9.52e-6062.16Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEF
        PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A    GE+R  A  TA + T+LFQYGERG+ G+NADCSICLDEF
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEF

Query:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
         EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  SEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

A0A6J1I603 RING-type E3 ubiquitin transferase1.39e-6264.47Show/hide
Query:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSIC
        PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A+ G  GE+RR A  TA + T+LFQYGERG+EG+NADCSIC
Subjt:  PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAAAGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSIC

Query:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS
        LDEF EG++CRMLPKCKH+FHRFCIDQWLPN+ HCPLCRSPV VR +++++S
Subjt:  LDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

SwissProt top hitse value%identityAlignment
P0C041 Putative RING-H2 finger protein ATL539.6e-1350Show/hide
Query:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV
        + G +    DCSICL EF+E +  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Subjt:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV

Q7XLY8 E3 ubiquitin-protein ligase Os04g05909002.8e-1255.32Show/hide
Query:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        DCS+CL EFS+G+  R+LP+C H FH+ CID WL +  +CPLCR+ +
Subjt:  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

Q9LF64 RING-H2 finger protein ATL522.8e-1231.07Show/hide
Query:  PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTK-------------LFQY--GE
        PPPPP        SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++             +ST  + T              +++Y  G+
Subjt:  PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTK-------------LFQY--GE

Query:  RGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS
          ++G  +DCS+CL EF E +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Subjt:  RGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS

Q9LX93 E3 ubiquitin-protein ligase RING14.6e-1535.62Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-----------EERRAA---------------ASTAEMRTKL
        PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G           EER  +               ++   +    
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-----------EERRAA---------------ASTAEMRTKL

Query:  FQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        F+ GE  I+G   +CS+CL+EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Subjt:  FQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

Q9LZJ6 RING-H2 finger protein ATL54.8e-1246.77Show/hide
Query:  LFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVR
        +F Y  +  E    +CS+CL EF E    R+LPKC H+FH  CID W  ++  CPLCR+PV+
Subjt:  LFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVR

Arabidopsis top hitse value%identityAlignment
AT4G17905.1 RING/U-box superfamily protein6.8e-1450Show/hide
Query:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV
        + G +    DCSICL EF+E +  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Subjt:  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV

AT4G28890.1 RING/U-box superfamily protein9.9e-1337.78Show/hide
Query:  YSQRQTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        +  R TA++    G ++ A  S    R    +  ++G+     DCS+CL +F   ++ R+LPKC+H FH  CIDQWL     CPLCR  V
Subjt:  YSQRQTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT4G33565.1 RING/U-box superfamily protein4.3e-1650Show/hide
Query:  KLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        K+ QY ++       DCS+CL EF E +  R+LPKCKH FH +CID WL +  +CPLCR+P+
Subjt:  KLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT5G10380.1 RING/U-box superfamily protein3.3e-1635.62Show/hide
Query:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-----------EERRAA---------------ASTAEMRTKL
        PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G           EER  +               ++   +    
Subjt:  PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-----------EERRAA---------------ASTAEMRTKL

Query:  FQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV
        F+ GE  I+G   +CS+CL+EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Subjt:  FQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV

AT5G17600.1 RING/U-box superfamily protein2.0e-1331.07Show/hide
Query:  PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTK-------------LFQY--GE
        PPPPP        SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++             +ST  + T              +++Y  G+
Subjt:  PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTK-------------LFQY--GE

Query:  RGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS
          ++G  +DCS+CL EF E +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Subjt:  RGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCGACCCACCGCCACCGCCGCCCGTCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTA
CTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGAGATGCGCA
CGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGT
AAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT
mRNA sequenceShow/hide mRNA sequence
CTCGACCCACCGCCACCGCCGCCCGTCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTA
CTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGAGATGCGCA
CGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGT
AAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT
Protein sequenceShow/hide protein sequence
LDPPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKC
KHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS