CuGenDBv2

Gene ID	MC03g0226
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S4
Genome location	MC03:5612981..5613331
RNA-Seq Expression	MC03g0226
Synteny	MC03g0226
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR022801 - Ribosomal protein S4/S9

Homology

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GenBank top hits

e value

%identity

Alignment

AUD56962.1 ribosomal protein subunit S4 [Cinchona pubescens]

1.76e-70

94.87

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

GAY67605.1 hypothetical protein CUMW_257870 [Citrus unshiu]

1.51e-70

93.16

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEED ERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK +IKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]

1.61e-70

96.58

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRTLKAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

WP_131796643.1 hypothetical protein [Candidatus Frankia datiscae]

3.77e-72

96.58

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRTLKAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]

1.41e-71

97.44

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRTLKAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

TrEMBL top hits

e value

%identity

Alignment

A0A2H4YAE2 Ribosomal protein subunit S4

8.51e-71

94.87

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

A0A2H4YAG5 Ribosomal protein subunit S4

8.51e-71

94.87

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

A0A2H4YAG7 Ribosomal protein subunit S4

8.51e-71

94.87

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

A0A2H5QTJ6 Uncharacterized protein

7.30e-71

93.16

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEED ERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK +IKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRT KAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

A0A7D6BZG8 Ribosomal protein S4

6.82e-72

97.44

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
        S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEV

Query:  NHRTLKAVVSYGPNIGH
        NHRTLKAVVSYGPNIGH
Subjt:  NHRTLKAVVSYGPNIGH

SwissProt top hits

e value

%identity

Alignment

Q31708 Ribosomal protein S4, mitochondrial

1.3e-44

81.51

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS
        S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHY 
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS

Query:  EVNHRTLKAVVSYGPNIGH
        EVN+RT KAVV YGPNIGH
Subjt:  EVNHRTLKAVVSYGPNIGH

Arabidopsis top hits

e value

%identity

Alignment

AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

7.6e-48

84.03

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS
        S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHYS
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS

Query:  EVNHRTLKAVVSYGPNIGH
        EVNHRT KAVVSYGPNIGH
Subjt:  EVNHRTLKAVVSYGPNIGH

ATMG00290.1 mitochondrial ribosomal protein S4

7.6e-48

84.03

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Query:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS
        S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHYS
Subjt:  SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYS

Query:  EVNHRTLKAVVSYGPNIGH
        EVNHRT KAVVSYGPNIGH
Subjt:  EVNHRTLKAVVSYGPNIGH

Sequences

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CDS sequence

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TCCAACAAGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCA
TTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCT
ATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCT
TATGGACCTAACATAGGTCAC

mRNA sequence

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Protein sequence

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SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVS
YGPNIGH

MC03g0226 (gene) of Bitter gourd (Dali-11) v1 genome