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MC03g0268 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0268
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description3'-5' exonuclease
Genome locationMC03:7852595..7852869
RNA-Seq ExpressionMC03g0268
SyntenyMC03g0268
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443244.1 PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo]2.82e-1748.35Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QL+H  +IP S+  +L+++SFTFVG+   E   K + +Y LKV K +DLR+LAE+V  RG+++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
XP_022147750.1 Werner Syndrome-like exonuclease [Momordica charantia]3.23e-2459.14Show/hide
Query:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        PN N  +ENPV TLQLCF   CLIFQLIHAS+IP S+ ++L D+SFTFVG+   E   K   +Y L V   VDLRNLAEN M RGD++N  LK
Subjt:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
XP_038903326.1 Werner Syndrome-like exonuclease isoform X1 [Benincasa hispida]2.16e-1750.55Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QLIH  +IP S+  +L+++S TFVG+   E   K + +Y LKV K VDLRNLAE+V  R D++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
XP_038903327.1 Werner Syndrome-like exonuclease isoform X2 [Benincasa hispida]1.27e-1750.55Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QLIH  +IP S+  +L+++S TFVG+   E   K + +Y LKV K VDLRNLAE+V  R D++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
XP_038906336.1 Werner Syndrome-like exonuclease [Benincasa hispida]5.41e-2153.76Show/hide
Query:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLS-INYLDDKSFTFVGLKSERTLKSSLN-YDLKVRKAVDLRNLAENVMERGDMRNGRLK
        PN N  +  PV TLQLC    CLIFQLIH S+IP S I++L+D +FTFVG+  ++ ++   N YDLKV   VDLR LA N MER D++N  LK
Subjt:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLS-INYLDDKSFTFVGLKSERTLKSSLN-YDLKVRKAVDLRNLAENVMERGDMRNGRLK
TrEMBL top hitse value%identityAlignment
A0A0A0LBN3 3'-5' exonuclease domain-containing protein1.36e-1748.35Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QL+H  +IP S+  +L+++SFTFVG+   E   K + +Y LKV K +DLR+LAE+V  RG+++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
A0A1S3B738 Werner Syndrome-like exonuclease1.36e-1748.35Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QL+H  +IP S+  +L+++SFTFVG+   E   K + +Y LKV K +DLR+LAE+V  RG+++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
A0A5A7UI20 Werner Syndrome-like exonuclease1.36e-1748.35Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QL+H  +IP S+  +L+++SFTFVG+   E   K + +Y LKV K +DLR+LAE+V  RG+++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
A0A6J1D107 Werner Syndrome-like exonuclease1.57e-2459.14Show/hide
Query:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        PN N  +ENPV TLQLCF   CLIFQLIHAS+IP S+ ++L D+SFTFVG+   E   K   +Y L V   VDLRNLAEN M RGD++N  LK
Subjt:  PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
E5GBP0 3'-5' exonuclease1.36e-1748.35Show/hide
Query:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
        +N  ++NPV TLQLC    CLI QL+H  +IP S+  +L+++SFTFVG+   E   K + +Y LKV K +DLR+LAE+V  RG+++N  LK
Subjt:  SNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGLK-SERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G12420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0633.75Show/hide
Query:  NSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGL--KSERTLKSSLNYDLKVRKAVDLRNLAEN
        + +HP   P  TLQLC  + CLI QL H  ++P S+ ++L D + TFVG+    +    +   + L++ K +D+R  A +
Subjt:  NSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSI-NYLDDKSFTFVGL--KSERTLKSSLNYDLKVRKAVDLRNLAEN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTAACTCCAATCACCCTCACGAAAATCCTGTCATTACATTACAACTCTGCTTTTATCACCCATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCTCTATCTAT
TAATTACTTGGACGACAAGTCCTTCACCTTTGTAGGTTTAAAATCGGAGAGGACGTTGAAAAGCTCGCTGAATTACGACTTGAAAGTGAGGAAGGCGGTGGATCTAAGGA
ATTTGGCTGAGAATGTGATGGAAAGAGGAGATATGAGGAATGGAAGATTGAAG
mRNA sequenceShow/hide mRNA sequence
CCTAACTCCAATCACCCTCACGAAAATCCTGTCATTACATTACAACTCTGCTTTTATCACCCATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCTCTATCTAT
TAATTACTTGGACGACAAGTCCTTCACCTTTGTAGGTTTAAAATCGGAGAGGACGTTGAAAAGCTCGCTGAATTACGACTTGAAAGTGAGGAAGGCGGTGGATCTAAGGA
ATTTGGCTGAGAATGTGATGGAAAGAGGAGATATGAGGAATGGAAGATTGAAG
Protein sequenceShow/hide protein sequence
PNSNHPHENPVITLQLCFYHPCLIFQLIHASKIPLSINYLDDKSFTFVGLKSERTLKSSLNYDLKVRKAVDLRNLAENVMERGDMRNGRLK