; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0279 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0279
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibosomal protein S12
Genome locationMC03:8315789..8316022
RNA-Seq ExpressionMC03g0279
SyntenyMC03g0279
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QKI32043.1 ribosomal protein S12 [Ombrophytum subterraneum]1.28e-3985.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHSIVLIRG RVKDSPGVKSHC  GVKDLLGI DRR+GRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

QVJ97865.1 ribosomal protein S12 [Apium graveolens]1.28e-3985.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]1.28e-3985.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]1.28e-3985.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

YP_009940638.1 ribosomal protein S12 [Passiflora edulis]1.28e-3985.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

TrEMBL top hitse value%identityAlignment
A0A7D6BYE6 Ribosomal protein S126.20e-4085.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

A0A7G8P5I5 Ribosomal protein S126.20e-4085.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

G3EIY3 Ribosomal protein S126.20e-4085.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

G3EU39 Ribosomal protein S126.20e-4085.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

W6JLR7 Ribosomal protein S126.20e-4085.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial4.2e-3182.05Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV L+NRHDIF HI GE HN QEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

P50892 Ribosomal protein S12, mitochondrial7.9e-3080.77Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDL+GI  RR GRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

P68535 Ribosomal protein S12, mitochondrial9.9e-3385.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

P68536 Ribosomal protein S12, mitochondrial9.9e-3385.9Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

Q95869 Ribosomal protein S12, mitochondrial2.4e-3183.33Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HN QEHS+VLIRG RVKDSPGVK HC  GVKDLLGI DRRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein6.6e-3282.05Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDL+GI  RRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI

ATCG00065.1 ribosomal protein S12A1.7e-1955.26Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK
        A RK+ +V L++  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK

ATCG00905.1 ribosomal protein S12C1.7e-1955.26Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK
        A RK+ +V L++  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK

ATCG01230.1 ribosomal protein S12B1.7e-1955.26Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK
        A RK+ +V L++  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein6.6e-3282.05Show/hide
Query:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI
        APRKI KV LSNRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDL+GI  RRRGRSKYGA+KPK I
Subjt:  APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCCACGTAAGATAGTCAAAGTATGGTTGAGCAATCGTCATGATATATTTGCTCACATTTCGGGCGAAAGTCATAATTTGCAGGAACATTCTATAGTGTTAATAAGAGG
AAGTAGAGTGAAAGATTCGCCGGGCGTGAAATCTCATTGTTTTTTAGGAGTCAAAGATTTGCTGGGAATTCTAGATCGAAGAAGAGGCAGATCTAAATATGGTGCACAAA
AACCAAAATTGATA
mRNA sequenceShow/hide mRNA sequence
GCTCCACGTAAGATAGTCAAAGTATGGTTGAGCAATCGTCATGATATATTTGCTCACATTTCGGGCGAAAGTCATAATTTGCAGGAACATTCTATAGTGTTAATAAGAGG
AAGTAGAGTGAAAGATTCGCCGGGCGTGAAATCTCATTGTTTTTTAGGAGTCAAAGATTTGCTGGGAATTCTAGATCGAAGAAGAGGCAGATCTAAATATGGTGCACAAA
AACCAAAATTGATA
Protein sequenceShow/hide protein sequence
APRKIVKVWLSNRHDIFAHISGESHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLLGILDRRRGRSKYGAQKPKLI