CuGenDBv2

Gene ID	MC03g0311
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein RDM1-like
Genome location	MC03:9211507..9212181
RNA-Seq Expression	MC03g0311
Synteny	MC03g0311
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

5.58e-116

90.8

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022159295.1 protein RDM1-like [Momordica charantia]

1.06e-124

99.43

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

3.66e-116

90.8

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

4.28e-115

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

1.28e-116

90.8

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TS+G+L KRAEMYQEYMKQIPIPAHRGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3H6 protein RDM1-like

5.11e-125

99.43

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

1.77e-116

90.8

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GV10 protein RDM1

1.40e-113

89.66

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPSMDD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

2.07e-115

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

4.01e-113

89.08

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPS+DD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSVIPFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

5.8e-49

55.21

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

4.1e-50

55.21

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Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS+IPFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Sequences

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CDS sequence

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ATGAAGAGGCCAATGCCATGGAACGAACAAGTGGATATTATTTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGTCAAAATGATGGGTTTGAGTTCAAGCC
TTCCATGGATGATTTGAAAATCCCTGCCAAAGAAATCACATCTGAAGGTTTGTTGACTAAAAGAGCAGAAATGTATCAAGAATACATGAAACAGATACCAATCCCAGCAC
ACCGTGGTTCTGTAATACCATTTACAACATGGGTGGGATTGGGCAAATCTATAAAGCAGCTATATAGTCAGCCTTTGCATTACCTGACTAATATTCAACTAAAACAGTGG
GATCAATTAAGATTCGGAAGTTCGGATGAATATAAGCCATTGGATACTTTAATTCATCCGAGTAAAGCTGAAGCAACCATATGGATGGTTGAAGAGATTCATAGGCGCAC
CTCGTCCCATCATCATGTTGCTAAACTCTGGCTATCAGACCCAATGCACCATGCGTATGTTGACTCCATTTTCCCCCAACTA

mRNA sequence

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Protein sequence

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MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

MC03g0311 (gene) of Bitter gourd (Dali-11) v1 genome