; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0372 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0372
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationMC03:10479390..10479566
RNA-Seq ExpressionMC03g0372
SyntenyMC03g0372
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDI73623.1 ribosomal protein S12, 3, partial [Pyrus spinosa]1.61e-3293.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

KYP38045.1 hypothetical protein KK1_040718, partial [Cajanus cajan]1.66e-3293.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

KYP43640.1 hypothetical protein KK1_034921, partial [Cajanus cajan]1.32e-3293.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

RWV89324.1 hypothetical protein GW17_00048527, partial [Ensete ventricosum]1.24e-3293.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

VVW89850.1 unnamed protein product, partial [Nymphaea colorata]1.11e-3293.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

TrEMBL top hitse value%identityAlignment
A0A151RM35 Uncharacterized protein (Fragment)6.38e-3393.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A0A287NDH3 Uncharacterized protein6.75e-3393.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A0A444CTW6 Uncharacterized protein (Fragment)6.02e-3393.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A0A5K1HM42 Uncharacterized protein (Fragment)5.38e-3393.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

V6BPW7 Ribosomal protein S12, 3 (Fragment)7.80e-3393.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

SwissProt top hitse value%identityAlignment
A4QJD9 30S ribosomal protein S12, chloroplastic2.0e-2593.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A4QJM3 30S ribosomal protein S12, chloroplastic2.0e-2593.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A4QJV5 30S ribosomal protein S12-A, chloroplastic2.0e-2593.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

A4QJX7 30S ribosomal protein S12-B, chloroplastic6.8e-2693.22Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

Q3V510 30S ribosomal protein S12, chloroplastic2.0e-2593.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.0e-1666.1Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        ST TPKKPNS  RK+A+VRL++  +I  +IPG GHN QEH  VLIRGGRVKD PGV+ H
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

ATCG00065.1 ribosomal protein S12A1.4e-2693.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

ATCG00905.1 ribosomal protein S12C1.4e-2693.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

ATCG01230.1 ribosomal protein S12B1.4e-2693.1Show/hide
Query:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Subjt:  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

ATMG00980.1 Ribosomal protein S12/S23 family protein1.0e-1666.1Show/hide
Query:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH
        ST TPKKPNS  RK+A+VRL++  +I  +IPG GHN QEH  VLIRGGRVKD PGV+ H
Subjt:  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCACTATCACCCCTAAAAAACCAAACTCTGTCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATAACTACTTATATACCTGGTATTGGTCATAATTT
ACAAGAACATTATGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCAC
mRNA sequenceShow/hide mRNA sequence
TCCACTATCACCCCTAAAAAACCAAACTCTGTCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATAACTACTTATATACCTGGTATTGGTCATAATTT
ACAAGAACATTATGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCAC
Protein sequenceShow/hide protein sequence
STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH