; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0398 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0398
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationMC03:10826332..10827834
RNA-Seq ExpressionMC03g0398
SyntenyMC03g0398
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139466.1 splicing factor U2af small subunit B [Cucumis sativus]3.03e-13471.58Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPR IQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF---RTRSHSPDR
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRI        F  Y       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF---RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+RSYG+HGHSRRYD+RDAYHESRSRR R+TSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWN+E  +Q N NNAN D ++++H
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022152942.1 splicing factor U2af small subunit B-like [Momordica charantia]3.26e-20497.95Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVV---LFRTRSHSPDR
        GDHMVGNVYVQYREEGQAANAL NLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYV+   LFRTRSHS DR
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVV---LFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022964867.1 splicing factor U2af small subunit B-like [Cucurbita moschata]1.93e-13872.26Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRIS    +  F  +       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NN+N DG ++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022970323.1 splicing factor U2af small subunit B-like [Cucurbita maxima]1.01e-13571.92Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRIS    +  F  +       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVRE S ERRA+ EQWNRE  +Q N+NNAN DG++ SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_023519661.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]3.35e-13972.6Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRIS    +  F  +       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NNAN DG+++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

TrEMBL top hitse value%identityAlignment
A0A1S3CFU2 splicing factor U2af small subunit B-like1.47e-13471.19Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHS------
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRI      L    + +  R RSHS      
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHS------

Query:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        P RHR+YE+RSYGRHGHSRRYD+RDAYHE+RSRR R+TSPG R SRSRS RGR+NRSP REGS ERRA+ EQWNRE  +Q N NNA  D +++SH
Subjt:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A5D3CV58 Splicing factor U2af small subunit B-like1.47e-13471.19Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHS------
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRI      L    + +  R RSHS      
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHS------

Query:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        P RHR+YE+RSYGRHGHSRRYD+RDAYHE+RSRR R+TSPG R SRSRS RGR+NRSP REGS ERRA+ EQWNRE  +Q N NNA  D +++SH
Subjt:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1DHM1 splicing factor U2af small subunit B-like1.58e-20497.95Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVV---LFRTRSHSPDR
        GDHMVGNVYVQYREEGQAANAL NLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYV+   LFRTRSHS DR
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVV---LFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1HM65 splicing factor U2af small subunit B-like9.33e-13972.26Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRIS    +  F  +       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NN+N DG ++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1I2J7 splicing factor U2af small subunit B-like4.91e-13671.92Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFS VTDF  A CR+YEENMCN G YCNFMHLKRIS    +  F  +       R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW---YAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVRE S ERRA+ EQWNRE  +Q N+NNAN DG++ SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

SwissProt top hitse value%identityAlignment
Q6AUG0 Splicing factor U2af small subunit B3.2e-6851.34Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P +SPT++L+NMYQR D I+PGVDA+G PIDP K+Q HFE+FYEDI+EE+SK+GE+E+LNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHSPD-RHR
         DHM+GNVYVQ+REE QA  A   L+ R+Y G  I V++S VTDF  A CR++EEN CN G YCNFMH+K+I        +         RS SP  RHR
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHSPD-RHR

Query:  NYEQ-------------------RSYGRHGHSRRYDDRDAY--------HESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE
           +                   R  G  G    Y   D+Y            SR  R    GRRR  S     RR RSPVRE S ERRA+ EQWNRE
Subjt:  NYEQ-------------------RSYGRHGHSRRYDDRDAY--------HESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE

Q94535 Splicing factor U2af 38 kDa subunit1.3e-4542.75Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARG--NPIDPRKIQRHFEEFYEDIFEEM-SKYGEIESLNVC
        +ASI GT+  + NC FY K+GACRHGD+CSR+H KP  S T+LL N+Y      +   D       +   ++Q H++ F+ED+F E   KYGEIE +NVC
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARG--NPIDPRKIQRHFEEFYEDIFEEM-SKYGEIESLNVC

Query:  DNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHSPDR
        DNLGDH+VGNVY+++R E  A  A  +L +R++GG  +  + S VTDF  A CR+YE   C    +CNFMHLK IS                        
Subjt:  DNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR-SRSRSLRGRRNRSPVREGSG
              R   R+ +SRR          R  RSRS SPGRRR SRSRS      RSP R G G
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR-SRSRSLRGRRNRSPVREGSG

Q9FMY5 Splicing factor U2af small subunit B1.6e-7556.49Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFS VTDF  A CR+YEEN CN G YCNFMH+K+IS       F  Y   +      R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE

Q9S709 Splicing factor U2af small subunit A9.3e-7655.94Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRS
         DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFS VTDF  A CR+YEEN CN G YCNFMH+K +S       F  Y   +        R+RS
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRS

Query:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
         SP   R+ ++R       S R  DR+ Y     +RS   S  + R  S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

Q9ZQW8 Splicing factor U2af small subunit A3.2e-7657.09Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP +SPTLLLSNMY R D I+PG+DA+GNPIDP KIQ  FE+FYEDIFEE+SKYGEIESL+VCDN 
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRT-RSHSPDRHR
         DHM+GNVYVQ+REE QAA AL+ L  RYY G  I V+FS V+DF  A CR+YEEN CN G YCNFMH+K I      L    +  L R+ RSHS  R R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRT-RSHSPDRHR

Query:  N----YEQRSYGRHGHSRRYDDRDAYH--------------ESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE
        +    + +R Y R   SR  D  D Y                 R R S  +   RRR RSR+      RSPVR+GS ERRA+ EQWNRE
Subjt:  N----YEQRSYGRHGHSRRYDDRDAYH--------------ESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.6e-2230.69Show/hide
Query:  GTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGV---DARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGD
        GT+  +A+CPF+ K GACR G +CSR+H  P  S TLL+ NMY       PG+      G      + +  +EEFYED+  E  KYGE+ +  VC N   
Subjt:  GTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGV---DARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGD

Query:  HMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEEN---MCNFGPYCNFMHLKR-----ISWYAYFLHFPFYVVLFRTRSHS
        H+ GNVYV YR    A  A +++  RY+ G  +  +F  ++ + VA C  Y ++    C+ G  CNF+H  R       W  +    P + +   T    
Subjt:  HMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEEN---MCNFGPYCNFMHLKR-----ISWYAYFLHFPFYVVLFRTRSHS

Query:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSR-SLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFD
            ++ E  S G    S      D+ H   SRRSRS         S  S R R+     ++ + E + R    N   G  +   + + +
Subjt:  PDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSR-SLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFD

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative6.6e-7755.94Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRS
         DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFS VTDF  A CR+YEEN CN G YCNFMH+K +S       F  Y   +        R+RS
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRS

Query:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
         SP   R+ ++R       S R  DR+ Y     +RS   S  + R  S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative2.1e-5452.5Show/hide
Query:  MYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFI
        MYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFS VTDF 
Subjt:  MYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFI

Query:  VAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR
         A CR+YEEN CN G YCNFMH+K +S       F  Y   +        R+RS SP   R+ ++R       S R  DR+ Y     +RS   S  + R
Subjt:  VAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF--------RTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR

Query:  SRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
          S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  SRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.1e-7656.49Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFS VTDF  A CR+YEEN CN G YCNFMH+K+IS       F  Y   +      R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein1.1e-7656.49Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFS VTDF  A CR+YEEN CN G YCNFMH+K+IS       F  Y   +      R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLF------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATTTCCGGGACGCAGATGGGCAGGGCTAACTGTCCCTTCTACTCCAAGGTCGGGGCCTGCCGCCATGGCGATCAGTGTTCCCGGTTGCACCCCAAGCCTCT
CATAAGCCCCACACTCTTGCTTTCTAATATGTACCAGAGACTTGATACGATTAGCCCTGGTGTCGACGCGCGCGGAAATCCGATCGACCCTCGTAAGATCCAGCGCCATT
TTGAGGAGTTCTATGAAGATATATTCGAGGAAATGAGCAAGTACGGTGAGATTGAGAGTTTGAATGTCTGTGACAACTTAGGTGACCACATGGTGGGTAATGTTTATGTT
CAATATCGAGAGGAGGGGCAAGCCGCAAATGCTCTTCGGAATCTTAGGGACAGATATTATGGTGGACTTCTAATTAGAGTCGACTTCTCTACAGTGACAGACTTTATAGT
AGCCGCTTGTAGACGATACGAAGAGAACATGTGTAATTTTGGTCCCTATTGTAATTTCATGCATCTGAAGAGGATAAGTTGGTATGCATATTTTCTTCACTTTCCCTTTT
ATGTAGTACTGTTTAGGACCAGGAGCCACAGCCCCGATAGGCATCGGAATTATGAACAACGCTCTTATGGTAGACATGGTCATAGTCGGAGGTATGATGACCGAGATGCT
TATCATGAAAGCCGGAGCAGGAGGAGTAGGAGTACAAGCCCAGGTCGTAGAAGAAGCAGAAGTCGTAGTCTGCGGGGAAGGAGGAACCGAAGTCCAGTTAGAGAAGGGAG
CGGAGAGAGGCGAGCTAGATTTGAGCAGTGGAACAGGGAAGGAGGACAGCAAGCAAATCATAACAATGCCAATTTTGATGGAAGTAAAAGTAGTCAT
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATTTCCGGGACGCAGATGGGCAGGGCTAACTGTCCCTTCTACTCCAAGGTCGGGGCCTGCCGCCATGGCGATCAGTGTTCCCGGTTGCACCCCAAGCCTCT
CATAAGCCCCACACTCTTGCTTTCTAATATGTACCAGAGACTTGATACGATTAGCCCTGGTGTCGACGCGCGCGGAAATCCGATCGACCCTCGTAAGATCCAGCGCCATT
TTGAGGAGTTCTATGAAGATATATTCGAGGAAATGAGCAAGTACGGTGAGATTGAGAGTTTGAATGTCTGTGACAACTTAGGTGACCACATGGTGGGTAATGTTTATGTT
CAATATCGAGAGGAGGGGCAAGCCGCAAATGCTCTTCGGAATCTTAGGGACAGATATTATGGTGGACTTCTAATTAGAGTCGACTTCTCTACAGTGACAGACTTTATAGT
AGCCGCTTGTAGACGATACGAAGAGAACATGTGTAATTTTGGTCCCTATTGTAATTTCATGCATCTGAAGAGGATAAGTTGGTATGCATATTTTCTTCACTTTCCCTTTT
ATGTAGTACTGTTTAGGACCAGGAGCCACAGCCCCGATAGGCATCGGAATTATGAACAACGCTCTTATGGTAGACATGGTCATAGTCGGAGGTATGATGACCGAGATGCT
TATCATGAAAGCCGGAGCAGGAGGAGTAGGAGTACAAGCCCAGGTCGTAGAAGAAGCAGAAGTCGTAGTCTGCGGGGAAGGAGGAACCGAAGTCCAGTTAGAGAAGGGAG
CGGAGAGAGGCGAGCTAGATTTGAGCAGTGGAACAGGGAAGGAGGACAGCAAGCAAATCATAACAATGCCAATTTTGATGGAAGTAAAAGTAGTCAT
Protein sequenceShow/hide protein sequence
MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVGNVYV
QYREEGQAANALRNLRDRYYGGLLIRVDFSTVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWYAYFLHFPFYVVLFRTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDA
YHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH