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MC03g0467 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0467
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationMC03:11528902..11533995
RNA-Seq ExpressionMC03g0467
SyntenyMC03g0467
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016020 - membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]4.10e-7795.76Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTID+YQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]2.56e-80100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVKVEDA
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]2.11e-7998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]4.98e-7897.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]7.35e-8099.15Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
TrEMBL top hitse value%identityAlignment
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 111.98e-7795.76Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTID+YQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 111.24e-80100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVKVEDA
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1EPI6 Mediator of RNA polymerase II transcription subunit 114.95e-7275.32Show/hide
Query:  MDPLTQNTSLQRLQNVEK------------------------------------RIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLR
        MDPLTQNTSLQRLQNVEK                                    RIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLR
Subjt:  MDPLTQNTSLQRLQNVEK------------------------------------RIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLR

Query:  DEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
        DEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVK+ED+
Subjt:  DEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 111.02e-7998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 112.41e-7897.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 115.3e-4675.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein3.8e-4775.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACC
GTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAA
TATCAAGTGAAAGTGGAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAATAGTCACTTTCTAAAATTCAAATATTAAAATCCACGTCATAGAAATAAAAAAACTAAAATAATCGAAGTTGAAAGTACAATAAAAAATTTTAAAAGTACAAAAA
AAAACAAAATCAACCACATTAGAACAATATTTAAACCTCAAAATATTTATTTCAGTTATTTCTGTAAGTTGCAGCCCCCTCTTGTCTCTCAAGTCTTAATACGCCGGATT
TCCTCCGCCTCTGCGATTCCCGTCAGCAATCCCTCCACCGTCCTTCACCGCATCAGCTCACCCGCCGCCGCCGCCGTCATTTTCATCTCTCAACCACAGCACGTTGCAGC
TCGCCCCACTTGGTTCCTAAATAAGATTAGTTAGTTTAAAATCCTCCATTTCCAGCAGAGCTCTTGATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAA
TGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGT
TCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAA
CTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAATATCAAGTGAAAGTGGAAGATGCTTGAGGCACTTGGATGAATAA
GGATAGGAAATTGATAAATCGTGTAACTTGGGGAAGGGATGGCTAGACTATCTTTTTTTTTTTTTTCCTTCTTCTTATAGTGATCTGTGGTATACTCTGTATTTTCTATA
AGTTGTCTTATTGGACGTATTGGTTCTCTCCATCTGTTTAGATCGGGTGCCCGAGTCACCTGGTACTCGTTATTGATTTTGATCTTCAAATTATTGATTATAATTTATAT
CTACCTTCTAGTTACGGTTTGGAACTACAAATCCTATTCATTAGTGTGGTGGAAGAGGATAACTTTTTCCATTGAGGCAGAAAACCCCCTATAGGAGTGGCAGAGCAAGG
CTCTTCTAGTTTGTTAGAGATGACACTATTTTCCTTTTCATTTGCTTAGTTTTGGTGCTTTATCTGTTAGTTCTTCATGTTCTTCAACCATTACGGGTGACCATTGGTCC
AAAGAGATTTGGATAAGGTGAGATAGAATGAGTTTAATCCCCATAATAGCTATCTACCTTAGGAATTTATTCCTATGTACTTTCCGACACCAAATGTCATAAGGTCAGGT
GGTTGTCCCGTGAGATCAGTCGAGATACGCATAAGCTGGTCTGGATACTCACGTGTGTGTATATATATAAAGGGGCTGATTCTTCTAAGCTGTGCAACACTATGATCAAG
ACAGGGTTCGAACTTGAGACCTCAAAGTAGGTGGTATTCCAAGGTCCAAACATTTGCCACTACGCCATCTTTTGGGGATTAAGTTTTGCTCATCACATAGAAGACATTTT
AGAGAGATGTTTTTATCATTGAGAAAAAAAGCCATGGCTATTTCTTCTCTCTTTCCTAAAAGTTTAAGAACATTCTATACCATATGCCTACATCTTAGGGTGTGAAAAGT
TCATTATAGCATTCGCTTACAACTTCCCTTTGAGAGAATATTAGCAACACACTGTATATACATGCACCTTGTCTGGAAGAATTTTTTAGCTTTTGTACCACAACCGTAAT
GACTTGTATCATCAAGTTTACCTGTGGAGATAAGATTCGACTTTATATTAAAAGTGTAATCAACATCCTTAGGAATAACCTACAACTTGTATTTAGTGCCCAATCGAACA
TTTCAATTCCTTATTTTTCAATGTCATAATCACTTGTAATGTGTATGAATATATATATAACATGCTTTCATTTGAAGTTACATGGATAGATATGCAACACTATTGCCCAC
TACCTATCACCACATGGATTGTAACTTATAATTAGATTGTCTCTAGATCGAATCTGTTATCTCGTTATATATTTTGTCACGTGTCCATCGGACATTTTCTATCTATGCTT
GGTGTTCCTTTGACAATGGG
Protein sequenceShow/hide protein sequence
MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE
YQVKVEDA