; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0563 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0563
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionribonuclease H2 subunit C
Genome locationMC03:12376826..12380650
RNA-Seq ExpressionMC03g0563
SyntenyMC03g0563
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domainsIPR013924 - Ribonuclease H2, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]6.49e-9282.53Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+ENER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQDS  W+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_022142418.1 ribonuclease H2 subunit C [Momordica charantia]2.34e-114100Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]5.33e-9181.93Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQDS  W+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]3.08e-9081.33Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQDS  W+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]7.57e-9181.93Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        M+AENER+ EVIVD D   DS A+DLSGKVHQLPC +K DGPCSVS YFKPK TGIE DGLSVEEAYFRGRKLQGATISLPEGYSG+VLG+K LGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQ Q+S  W+VKAKF NITYWNH TLPSQDD F+RSFHWLTVAQALH+PVTAEDLASASTA K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
TrEMBL top hitse value%identityAlignment
A0A1S3C9A8 uncharacterized protein C12B10.15c5.68e-8474.4Show/hide
Query:  MDAENERQREVIVDLDL--GRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  VD D   G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPK TGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIVDLDL--GRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A5A7TIT8 Ribonuclease H2 subunit C isoform X25.68e-8474.4Show/hide
Query:  MDAENERQREVIVDLDL--GRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK
        M+A+N R+ E  VD D   G D +A+DLSGK+HQLPCT+K DGPC VSHYFKPK TGIEVDGL+VEEAYFRGRKLQGATISLPEGYSG+VLG+K LGK K
Subjt:  MDAENERQREVIVDLDL--GRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRK

Query:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        +S+Q  DS  W+VKAKF NITYWNH TLPSQDD F+R+FHWLTVAQALH+PVTAEDLASAS A  ++S
Subjt:  ASEQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1CLH6 ribonuclease H2 subunit C1.13e-114100Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
Subjt:  EQSQDSWEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1EN41 uncharacterized protein C12B10.15c2.58e-9181.93Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQDS  W+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
A0A6J1KH29 uncharacterized protein C12B10.15c1.49e-9081.33Show/hide
Query:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSV+ AYFRGRKLQGATISLPEGY G+V+GRK L KRKAS
Subjt:  MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKAS

Query:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
        E+SQDS  W+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA ASTA K+MS
Subjt:  EQSQDS--WEVKAKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS
SwissProt top hitse value%identityAlignment
Q10448 Uncharacterized protein C12B10.15c3.0e-0731.36Show/hide
Query:  KVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-
        K   LPC +  DGP  V  YF  K   I  +  S      RGR+L G  + LPE Y+G  VL    L   + SE+   + +W + + F  +  WN   + 
Subjt:  KVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-FVLGRKDLGKRKASEQS--QDSWEVKAKFGNITYWNHSTL-

Query:  PSQDDMFRRS-FHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDMFRRS-FHWLTVA
Q8TDP1 Ribonuclease H2 subunit C4.2e-0929.93Show/hide
Query:  VHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA
        +H LPC V +DGP  V  +F P        G    E  FRGR L+G  +++P G  G+V         +G+ D L      +Q ++  E          A
Subjt:  VHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFV---------LGRKD-LGKRKASEQSQDSWE--------VKA

Query:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV
         F   T W   T+P  D   R +  W ++A A+H  V
Subjt:  KFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPV
Arabidopsis top hitse value%identityAlignment
AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5.6e-4960.4Show/hide
Query:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF
        ++  VDLS +VHQLPC ++ DGP  VSHYFKPK + +E+DG+  EEA+FRGRKLQGATISLP GYSGFVL +       GKRKAS  ++D+  WEVKAKF
Subjt:  DSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKD----LGKRKASEQSQDS--WEVKAKF

Query:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS
         N+TYWNH +LPS+DD F RSFHW ++A+ALH+PV  EDL + S   K+
Subjt:  GNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGGAAAACGAGAGGCAAAGGGAAGTAATTGTGGATCTTGATCTTGGGAGGGACTCGGAAGCTGTCGACCTCAGCGGCAAAGTTCATCAGCTTCCCTGTACCGT
TAAACTCGATGGTCCTTGCTCTGTTTCTCACTATTTCAAACCCAAATTCACTGGAATCGAGGTTGACGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AAGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTTTGTGCTAGGGAGGAAAGATCTTGGAAAGCGAAAAGCTTCTGAACAGTCTCAGGACTCTTGGGAGGTGAAG
GCCAAATTTGGAAACATAACATATTGGAACCACAGCACCCTGCCTTCACAAGATGATATGTTTCGGCGTTCTTTTCACTGGCTTACCGTTGCACAAGCATTGCACCAACC
GGTGACAGCAGAAGATCTGGCATCTGCATCTACTGCTCACAAGAGCATGAGTTGA
mRNA sequenceShow/hide mRNA sequence
AATTAAGATTTAATGTGTCAACAAAACAATGAAGATAATTTTGAGCGGGAAAATCTTGGACGACAACCGATTCTCAATGCTCAAAAGAGCGGGAATTATAGAATCTGAAG
GAAAAATGGTCGATTGAAATTCATCGCCAGAAATCCGAAGCATCTACGTGGGGTTTAAGGTTTTTCAGATTTGGGGTTTGGTTCAAAATTCATCAAATGGATGCGGAAAA
CGAGAGGCAAAGGGAAGTAATTGTGGATCTTGATCTTGGGAGGGACTCGGAAGCTGTCGACCTCAGCGGCAAAGTTCATCAGCTTCCCTGTACCGTTAAACTCGATGGTC
CTTGCTCTGTTTCTCACTATTTCAAACCCAAATTCACTGGAATCGAGGTTGACGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAAGGAGCTACCATT
TCCCTTCCAGAAGGTTACTCTGGCTTTGTGCTAGGGAGGAAAGATCTTGGAAAGCGAAAAGCTTCTGAACAGTCTCAGGACTCTTGGGAGGTGAAGGCCAAATTTGGAAA
CATAACATATTGGAACCACAGCACCCTGCCTTCACAAGATGATATGTTTCGGCGTTCTTTTCACTGGCTTACCGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAG
ATCTGGCATCTGCATCTACTGCTCACAAGAGCATGAGTTGATTAGGATCATTTCGTCAACTTGTTGCTGGTAGGGGTGTCAATTTTTTCTATGGAGACCACTGAATTTGG
CGAGAATTTCTCATTTTAACGAGAATGAGGTCGGGGACGAGGAATAGTTTTTCTCCATTTTAATTCTGATCGTGAATTCAGTCCCCTATCCTCAGAATAATATGTATATA
TAGAGATTAAATTTTTTATATTTCAAGGTTGTAAATGATTTATTTTTATAGAATCATTGAACTCAACATCCA
Protein sequenceShow/hide protein sequence
MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQDSWEVK
AKFGNITYWNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS