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MC03g0606 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0606
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationMC03:12795124..12795426
RNA-Seq ExpressionMC03g0606
SyntenyMC03g0606
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.77e-0832.67Show/hide
Query:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA
        W  L+D  N    +   +    +           N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +A
Subjt:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA

Query:  F
        F
Subjt:  F

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.85e-0933.33Show/hide
Query:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        +++  I  H+   +       LC S+         N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +
Subjt:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.89e-0832.35Show/hide
Query:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        +++  I  H+   +       LC ++         N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +
Subjt:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.80e-0832.67Show/hide
Query:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA
        W  L+D  N    +   +    +           N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +A
Subjt:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA

Query:  F
        F
Subjt:  F

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]8.64e-0933.33Show/hide
Query:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCH-SLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        W++L   FNL   +    +  + + L+ P  H S  +LWCN + ++L  +W  RN RIF   +  C    +     ASSW   S  F  Y++S  +LNW 
Subjt:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCH-SLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein1.83e-0832.67Show/hide
Query:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA
        W  L+D  N    +   +    +           N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +A
Subjt:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA

Query:  F
        F
Subjt:  F

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein3.80e-0933.33Show/hide
Query:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        +++  I  H+   +       LC S+         N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +
Subjt:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.88e-0832.35Show/hide
Query:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        +++  I  H+   +       LC ++         N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +
Subjt:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein1.88e-0832.35Show/hide
Query:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS
        +++  I  H+   +       LC ++         N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +
Subjt:  NLFPPIQGHVEEFITETLSPPLCHSL---------NILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWS

Query:  AF
        AF
Subjt:  AF

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein1.84e-0832.67Show/hide
Query:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA
        W  L+D  N    +   +    +           N++  N   S LW++WL RN RIF    K    +W+ I  LA  W+  S+ F NY  SSI+LN +A
Subjt:  WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSA

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGCATCGACTGTTTGATATCTTCAACTTATTTCCTCCGATTCAAGGCCACGTCGAAGAGTTCATCACAGAAACGCTATCCCCTCCTCTGTGCCATAGTCTTAATATCCT
TTGGTGCAATGTTATGGGATCCATTTTATGGTCAGTGTGGTTGAACAGAAACAATAGAATTTTTGTCTATATCTCCAAATATTGCAACCACCTTTGGGATCACATTATTG
TTTTAGCTTCCTCTTGGTCTTTCAATTCTACTTTCTTTTGTAACTACAATATCTCGTCCATTTCACTTAACTGGAGCGCTTTT
mRNA sequenceShow/hide mRNA sequence
TGGCATCGACTGTTTGATATCTTCAACTTATTTCCTCCGATTCAAGGCCACGTCGAAGAGTTCATCACAGAAACGCTATCCCCTCCTCTGTGCCATAGTCTTAATATCCT
TTGGTGCAATGTTATGGGATCCATTTTATGGTCAGTGTGGTTGAACAGAAACAATAGAATTTTTGTCTATATCTCCAAATATTGCAACCACCTTTGGGATCACATTATTG
TTTTAGCTTCCTCTTGGTCTTTCAATTCTACTTTCTTTTGTAACTACAATATCTCGTCCATTTCACTTAACTGGAGCGCTTTT
Protein sequenceShow/hide protein sequence
WHRLFDIFNLFPPIQGHVEEFITETLSPPLCHSLNILWCNVMGSILWSVWLNRNNRIFVYISKYCNHLWDHIIVLASSWSFNSTFFCNYNISSISLNWSAF