; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g0904 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0904
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationMC03:15792316..15792985
RNA-Seq ExpressionMC03g0904
SyntenyMC03g0904
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.50e-3033.19Show/hide
Query:  FWHHNWAGNGG---PPPHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ E              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  +  +  
Subjt:  FWHHNWAGNGG---PPPHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   + +     P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N   ++LW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.71e-3134.89Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN
        FW  NW GN       P L+ALS        DL     +       RPL D E   W +I  S P P  DRG   P W  + + IF   S+K  L   S 
Subjt:  FWHHNWAGNGGPP---PHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +    +
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  +  ++ ++  N I  LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.74e-3033.62Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ +              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  L  +  
Subjt:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N    LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.23e-3134.89Show/hide
Query:  FWHHNWAGNGG---PPPHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN
        FW  NW GN       P L+ALS        DL     +       RPL D E   W +I  S P P  DRG   P W  + + IF   S+K  L   S 
Subjt:  FWHHNWAGNGG---PPPHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +    +
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  +  ++ ++  N I  LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.87e-3033.62Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ +              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  L  +  
Subjt:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N    LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein7.27e-3133.19Show/hide
Query:  FWHHNWAGNGG---PPPHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ E              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  +  +  
Subjt:  FWHHNWAGNGG---PPPHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   + +     P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N   ++LW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein8.28e-3234.89Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN
        FW  NW GN       P L+ALS        DL     +       RPL D E   W +I  S P P  DRG   P W  + + IF   S+K  L   S 
Subjt:  FWHHNWAGNGGPP---PHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +    +
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  +  ++ ++  N I  LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.98e-3234.89Show/hide
Query:  FWHHNWAGNGG---PPPHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN
        FW  NW GN       P L+ALS        DL     +       RPL D E   W +I  S P P  DRG   P W  + + IF   S+K  L   S 
Subjt:  FWHHNWAGNGG---PPPHLYALSAKD-----DLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRL-RGSN

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +    +
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  +  ++ ++  N I  LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.33e-3033.62Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ +              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  L  +  
Subjt:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N    LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein9.03e-3133.62Show/hide
Query:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-
        FW  NW GN       P L+ALS     S+ +              RPL D E   W +I  S P P  +RG   P W  + + IF   S+K  L  +  
Subjt:  FWHHNWAGNGGPP---PHLYALSAKDDLSLSE-----EQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSN-

Query:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR
         P   H   +  LWK  +PKKCKFFI  ++H  INT D+LQ R P   +SPNW  +C  S E ++HL +H PY+  LW +   +       P  +   ++
Subjt:  QPQYRH---FTKLWKHIYPKKCKFFI-CILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMR

Query:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF
         + S  + N++ ++  N    LLW I +E   RIF
Subjt:  EVLSTPLTNERNILWCNAIGSLLWHILMESKVRIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGCATCATAACTGGGCAGGCAATGGCGGCCCCCCACCCCATCTTTATGCTTTATCTGCCAAAGATGATCTCTCTTTATCAGAAGAGCAATTCATGGAATTTTTTCC
AAAGCGACCTCTTATGGATAGGGAGCTTGTCCCATGGCGCAGCATATCAAATTCGTTCCCTGCACCATCAGAAGACAGAGGCTCTGATGCTCCAACCTGGATTTTCTCCC
GGGATGGTATTTTTACTGTGAAATCGTTGAAAACAAGACTACGGGGCAGCAACCAACCACAGTACAGACACTTCACAAAATTATGGAAACATATCTATCCCAAGAAGTGC
AAATTCTTCATATGCATTCTTCATCGAGCCATAAACACACAGGACAAGCTTCAAGCCCGTTCACCGTATATCTGTATTAGTCCGAATTGGTTTGTTCTCTGCATTTCCTC
TTCTGAATCTATGGACCATCTCTCCCTTCATTTCCCTTACACAACGGCTCTTTGGTATCGCCTTTTTGAGATCTTCCATGTGGCTCTTGTGCTTCCTCAGCAAATACACA
TTTTCATGAGAGAAGTTCTTTCCACTCCTCTCACAAATGAGCGTAATATCCTCTGGTGCAATGCTATAGGCTCTCTCCTTTGGCACATTTTGATGGAAAGTAAGGTTAGA
ATCTTC
mRNA sequenceShow/hide mRNA sequence
TTTTGGCATCATAACTGGGCAGGCAATGGCGGCCCCCCACCCCATCTTTATGCTTTATCTGCCAAAGATGATCTCTCTTTATCAGAAGAGCAATTCATGGAATTTTTTCC
AAAGCGACCTCTTATGGATAGGGAGCTTGTCCCATGGCGCAGCATATCAAATTCGTTCCCTGCACCATCAGAAGACAGAGGCTCTGATGCTCCAACCTGGATTTTCTCCC
GGGATGGTATTTTTACTGTGAAATCGTTGAAAACAAGACTACGGGGCAGCAACCAACCACAGTACAGACACTTCACAAAATTATGGAAACATATCTATCCCAAGAAGTGC
AAATTCTTCATATGCATTCTTCATCGAGCCATAAACACACAGGACAAGCTTCAAGCCCGTTCACCGTATATCTGTATTAGTCCGAATTGGTTTGTTCTCTGCATTTCCTC
TTCTGAATCTATGGACCATCTCTCCCTTCATTTCCCTTACACAACGGCTCTTTGGTATCGCCTTTTTGAGATCTTCCATGTGGCTCTTGTGCTTCCTCAGCAAATACACA
TTTTCATGAGAGAAGTTCTTTCCACTCCTCTCACAAATGAGCGTAATATCCTCTGGTGCAATGCTATAGGCTCTCTCCTTTGGCACATTTTGATGGAAAGTAAGGTTAGA
ATCTTC
Protein sequenceShow/hide protein sequence
FWHHNWAGNGGPPPHLYALSAKDDLSLSEEQFMEFFPKRPLMDRELVPWRSISNSFPAPSEDRGSDAPTWIFSRDGIFTVKSLKTRLRGSNQPQYRHFTKLWKHIYPKKC
KFFICILHRAINTQDKLQARSPYICISPNWFVLCISSSESMDHLSLHFPYTTALWYRLFEIFHVALVLPQQIHIFMREVLSTPLTNERNILWCNAIGSLLWHILMESKVR
IF