CuGenDBv2

Gene ID	MC03g0925
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	MC03:15928001..15928998
RNA-Seq Expression	MC03g0925
Synteny	MC03g0925
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

1.27e-59

95.1

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]

5.58e-63

100

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

3.64e-59

93.14

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK +IA AVN GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

4.42e-59

95.1

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_038876969.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]

2.19e-60

94.12

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATN LKS++A AVNMGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

6.14e-60

95.1

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

1.02e-58

93.14

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS+IA AV+ GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

2.70e-63

100

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

5.05e-59

92.16

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK +IA A+N GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

1.76e-59

93.14

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK +IA AVN GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

3.3e-04

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Query:  VTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G R+  K+L ++L G  V+ +Y   DI K         D   +  +EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

3.0e-40

78.43

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Query:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS+I++AV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGGCTACTAATAGCCTGAAGAGTATTATTGCTACAGCAGTCAATATGGGAGTGACAGAGGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGTCAACGATC
AACCCACAAGCTTTTGCGTAAAAAACTCATTGGCGATAAAGTATCTCAGTGGTATCCATACGACATCAAGAAGGACGATCCTCTCGTTATGGCTCGTCAAGAACAAGAGC
GCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAGGGGCCGCCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAATAAG

mRNA sequence

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Protein sequence

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MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

MC03g0925 (gene) of Bitter gourd (Dali-11) v1 genome