; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC03g1056 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g1056
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRING-H2 finger protein ATL48-like
Genome locationMC03:16916969..16920238
RNA-Seq ExpressionMC03g1056
SyntenyMC03g1056
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]1.25e-4589.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]1.78e-4589.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]2.47e-4982.52Show/hide
Query:  LIQTHLSSGVNQSDTASGFREMGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPW
        LIQ  L S V   +TAS F  M S EPNL+EFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPW
Subjt:  LIQTHLSSGVNQSDTASGFREMGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPW

Query:  RSS
        R S
Subjt:  RSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]3.08e-4692.68Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S EPNL+EFFVEKKRARNPLVP+GALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYGDNPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]6.50e-4895.12Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M SEEPNL+EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein6.07e-4689.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL488.63e-4689.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL488.63e-4689.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like1.20e-4982.52Show/hide
Query:  LIQTHLSSGVNQSDTASGFREMGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPW
        LIQ  L S V   +TAS F  M S EPNL+EFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPW
Subjt:  LIQTHLSSGVNQSDTASGFREMGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPW

Query:  RSS
        R S
Subjt:  RSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like3.51e-4591.46Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S E NL+EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B5.5e-0742.86Show/hide
Query:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA
        S     +E F+ K R  NP+VP+G L TA VLT GL  F QGNS   +++M  ++  QG T+ A+++G A
Subjt:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial7.2e-0735.56Show/hide
Query:  SDTASGFREMGSEEPNLEE---FFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNP
        SD  S F    S + N +    + + ++    PLVP+G L T G L     + R GN      +  ARV  QG TVA ++G A YYG +P
Subjt:  SDTASGFREMGSEEPNLEE---FFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNP

Q7X843 RING-H2 finger protein ATL489.3e-3180Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        M S EP++E+ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial7.7e-0950Show/hide
Query:  NLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA
        + +E FV K R  NP+VP+G L TA  LT GL SF +GNS   Q++MR R+  QG TV A+++G A
Subjt:  NLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A3.8e-0845.71Show/hide
Query:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGAT-VALMVGTA
        S     +E F+ K R  NP+VP+G L TA  LT GL  F +G SH  Q++MR R+  QG T VA+++G A
Subjt:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein6.6e-3280Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        M S EP++E+ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAGGTCCACACCCGTGACCCGTCACCCGGTCGCATTTGTACGAGAGGAGGAAGGCAACGCAAGACGAAGGCCTCCTCCATCACCGTGTTTGATTCAGACTCATCTCTC
TTCCGGCGTCAATCAATCCGATACGGCCTCGGGATTCAGAGAAATGGGCTCAGAGGAACCCAATTTGGAAGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTCG
TCCCCGTCGGTGCACTTGTCACTGCTGGCGTTCTCACTGCTGGGTTAATCAGTTTCAGACAAGGCAACTCTCATCTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTC
CAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACTATGGAGATAATCCATGGCGATCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATTTAGGTCCACACCCGTGACCCGTCACCCGGTCGCATTTGTACGAGAGGAGGAAGGCAACGCAAGACGAAGGCCTCCTCCATCACCGTGTTTGATTCAGACTCATCTCT
CTTCCGGCGTCAATCAATCCGATACGGCCTCGGGATTCAGAGAAATGGGCTCAGAGGAACCCAATTTGGAAGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTC
GTCCCCGTCGGTGCACTTGTCACTGCTGGCGTTCTCACTGCTGGGTTAATCAGTTTCAGACAAGGCAACTCTCATCTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGT
CCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACTATGGAGATAATCCATGGCGATCGAGTTAAATGTCTATGTACTGCTCTTTATCATTTTATTTTCAGC
ATTTCGTTTGACATCGACGGATTTTAGTACAATGAAAGATGGTTGCCTAACAATCTTTCTGTAGGTATAACAATATGTTATTCAGTGATATGGTGACAGTACTTATAGAT
ACTTGAAATAATTCTTGAGGGAAAGAAAGTGTAATATGCATTCATTCTTGGGGCATAGCCGCATAGTTCTGTTGACTTGAAAGATATGAATCCTGGTGTTATGTTGAAAC
ATTGAAATTATGAGAGATAATCCTCGAGTATATTCTCAATTTCTTCATCTTTATTTCCATGAACATCTATATATATTATGTATATTTCCTCTTGTCTACACAAAATGGCC
GAAATCTGTTGGAGGAGTTCACTCATTATAGTTGTCTTCTCCTCTCCATTGTGTTGAGCATATAGCATTGTTATTTGGTATTCTGCAGTAAATATAGAAAAGGGAAAGGT
AGAGACAGGTGAGAAGCTACACATGTGGATGTTTTACTTCCTTTCTTCCATTTTCTGCACATGGTTTCTATTTAGCAGCATTCAAGTTGTGGCTGTAGGTTTGCCAATTG
CTACACTTCATTTTCATGTCAAGGCCAAGAGTTCGACTTGAGATCTGTCGCTTTATCTCCTTTAGACTCGACAAATGGGAATGTCTCATTATGAGGAAAGTTGCACAGAA
CAGAATTCCATTTCCCTTCTGTCCAAGGAATTGGGTAAGCCACAGGGTGCAGGGTGACTGTGAATAGTCCCGACGGCCCGTGCCGACCAAATAACCAGCACGTGAGGCGA
AGGACAGCTGTCGGAATTCTGGGATTCCAGTGGAAGTTGTCTGTCAGTTTCTGGCAAACAGACTAGTGGCCATGATTTTGTCTTCAAAAGCTGCCTGACACGTATTTGAC
GCCTAATTCCAGTTCCTCTTGCCATAATGCTGCTGCTCCTAGGTTGAAGAGGAAGAGAAGAGAAGCAAGAGAGGTTCGCCGGAAAGTGCAGAAGCTCCGGTGTGTGGTGC
CTGGCGGCCGACAGCTGCAACGGGAACATCTCTTCGCCAAGACAGCTCATTACATCTTGCATTTGAGATTGAAAGTTTGTGCGCTTGAGACCATTCTCAAATTGCAGGAC
CAGGCTTGACAATGAAGTCACATGACATGAATTTTTTCTCTCTTTTTCTCATCTCCAACTCCAAGGCTTTTCTTTTACATAAAAATTTGTTTACTTGATCTTGTTTCCTG
TCGATCTGGTTGACACTGGACAAATATAAGTTATTCGCCAGTCACATTGTGGAGTATTTAGTATATATTTGTGTGGTAGTAAATATGTATACAAGTTGGGAGGATCTTAA
GCTATGTTTTGCAAATATAATGTGTTGATTTACTCCAGTTGGATTCCTAAGTCTTCTTCACTTTTATATTTTTCTTAATGAAAGTTTATTAGATATCTCATGTTATCGAG
AGT
Protein sequenceShow/hide protein sequence
FRSTPVTRHPVAFVREEEGNARRRPPPSPCLIQTHLSSGVNQSDTASGFREMGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVV
QGATVALMVGTAFYYGDNPWRSS