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MC03g1116 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g1116
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiontranscription factor PRE3-like
Genome locationMC03:17379553..17379910
RNA-Seq ExpressionMC03g1116
SyntenyMC03g1116
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152438.1 transcription factor PRE3 [Cucumis sativus]4.76e-4590Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]5.78e-4691.11Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+G VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

XP_022137442.1 transcription factor PRE3-like [Momordica charantia]6.94e-54100Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]4.76e-4590Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]6.76e-4588.89Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+  +RISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein2.30e-4590Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like2.80e-4691.11Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+G VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like2.77e-4490.8Show/hide
Query:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SRSR S+G VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

A0A6J1C896 transcription factor PRE3-like3.36e-54100Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like2.30e-4590Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        SGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLTQ
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI71.8e-2267.78Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        S RSRSR S+   RI+DEQI DL+ KLQ LLPE R   +D+V SA+VLQETC+YIR LHREVDDLSERL+ LLA +D  TAQAA+IR LL
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI63.3e-2472.22Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+EVDDLSERLS LLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI63.3e-2472.22Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+EVDDLSERLS LLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE62.0e-2471.26Show/hide
Query:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Subjt:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE37.7e-2977.53Show/hide
Query:  RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR LHREVDDLSERLS LLA SDTAQAA+IRSLLTQ
Subjt:  RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.4e-2571.26Show/hide
Query:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Subjt:  SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 15.5e-3077.53Show/hide
Query:  RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR LHREVDDLSERLS LLA SDTAQAA+IRSLLTQ
Subjt:  RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.1e-2162.07Show/hide
Query:  RSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLL--ATSDTAQAAIIRSLL
        RSR ++   RISD+Q+ DL+ KL+Q LPEI     SDKVS++KVLQETCNYIR+LHREVD+LS+RLS LL     D+ +AA+IRSLL
Subjt:  RSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLL--ATSDTAQAAIIRSLL

AT3G47710.1 BANQUO 33.6e-2161.54Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ
        S +SRSR   G   I+DEQI DL+ +L +LLPE+  N  S KVS+++VLQETC+YIR L +EVDDLSERLS LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.9e-2162.07Show/hide
Query:  RSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLAT--SDTAQAAIIRSLL
        RSR S+   RISD Q+ DL+ KL+Q+LPEI +   SDK S++KVLQETCNYIR L+REVD+LSERLS LL +   D+ +AA+IRSLL
Subjt:  RSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAACGC
CCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGTTGG
CGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAG
mRNA sequenceShow/hide mRNA sequence
TCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAACGC
CCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGTTGG
CGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAG
Protein sequenceShow/hide protein sequence
SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLTQ