CuGenDBv2

Gene ID	MC04g0329
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box domain-containing protein
Genome location	MC04:2595486..2595866
RNA-Seq Expression	MC04g0329
Synteny	MC04g0329
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8008803.1 hypothetical protein FH972_005278 [Carpinus fangiana]

2.18e-24

45.31

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH    +SL FF+  E   H ++LPK   GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYIS
              V+LLNPISG +  LP L    S
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYIS

KAE8008804.1 hypothetical protein FH972_005279 [Carpinus fangiana]

9.30e-26

46.09

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH  + +SL FF+  E   H ++LPK  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYIS
              V+LLNPISGV+  LP L    S
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYIS

KAE8008846.1 hypothetical protein FH972_005319 [Carpinus fangiana]

1.15e-24

45.53

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH  + +SL FF+  E   H ++LP+  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LL+PISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

KAE8055702.1 hypothetical protein FH972_012527 [Carpinus fangiana]

1.41e-25

43.55

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W++LP  +ME I   LN  D +H+S VCKSW SL+     R  PQ+PW++LPH+   +SL F++  E   + ++LPK  +GG+ FG SK WL++     R
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWY-HVYLLNPISGVKCRLPPL
         + W   VYL NP SG K  LP L
Subjt:  RSGWY-HVYLLNPISGVKCRLPPL

XP_022155350.1 uncharacterized protein LOC111022492 [Momordica charantia]

5.15e-31

49.22

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRR
        W++LP D+MEKI L LNSTDYI  S+VCKSW SLL QSDI RPQ PW+LLPH S  H++K ++  E K+H   +     G  + G SKGW++       +
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRR

Query:  SGWYHVYLLNPISGVKCRLPPLPNYISL
        +    + L NPISG KC L  LP  +SL
Subjt:  SGWYHVYLLNPISGVKCRLPPLPNYISL

TrEMBL top hits

e value

%identity

Alignment

A0A5N6QP56 F-box domain-containing protein

4.50e-26

46.09

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH  + +SL FF+  E   H ++LPK  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYIS
              V+LLNPISGV+  LP L    S
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYIS

A0A5N6QPU6 F-box domain-containing protein

5.54e-25

45.53

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH  + +SL FF+  E   H ++LP+  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LL+PISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

A0A5N6QRN4 F-box domain-containing protein

1.06e-24

45.31

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLPH    +SL FF+  E   H ++LPK   GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYIS
              V+LLNPISG +  LP L    S
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYIS

A0A5N6R432 F-box domain-containing protein

6.81e-26

43.55

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W++LP  +ME I   LN  D +H+S VCKSW SL+     R  PQ+PW++LPH+   +SL F++  E   + ++LPK  +GG+ FG SK WL++     R
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWY-HVYLLNPISGVKCRLPPL
         + W   VYL NP SG K  LP L
Subjt:  RSGWY-HVYLLNPISGVKCRLPPL

A0A6J1DM79 uncharacterized protein LOC111022492

2.49e-31

49.22

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRR
        W++LP D+MEKI L LNSTDYI  S+VCKSW SLL QSDI RPQ PW+LLPH S  H++K ++  E K+H   +     G  + G SKGW++       +
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRR

Query:  SGWYHVYLLNPISGVKCRLPPLPNYISL
        +    + L NPISG KC L  LP  +SL
Subjt:  SGWYHVYLLNPISGVKCRLPPLPNYISL

SwissProt top hits

e value

%identity

Alignment

Q9FVS1 F-box/kelch-repeat protein At1g57790

8.1e-08

29.41

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS
        W+DLP +++  +   L   D + ASVVCKSW     S     + PW L+      ++  F++    K + + LPK L G  +  S  GWL++      + 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS

Query:  GWYHVYLLNPISGVKCRLP
           H  L NP +     LP
Subjt:  GWYHVYLLNPISGVKCRLP

Q9LSA5 F-box/kelch-repeat protein At3g18720

1.5e-06

30.16

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Query:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQS----DDHSLKFFNFLEVKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR
        DL ++++ ++GL  N    IHAS+VCK+WL    S       PW+  P        +     FN    + H L+ P+ L G    +  +  GWL+VV   
Subjt:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQS----DDHSLKFFNFLEVKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR

Query:  RRRSGWYHVYLLNPISGVKCRLPPLP
          +     V+ LNP +G +  LP +P
Subjt:  RRRSGWYHVYLLNPISGVKCRLPPLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G57790.1 F-box family protein

5.7e-09

29.41

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Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS
        W+DLP +++  +   L   D + ASVVCKSW     S     + PW L+      ++  F++    K + + LPK L G  +  S  GWL++      + 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS

Query:  GWYHVYLLNPISGVKCRLP
           H  L NP +     LP
Subjt:  GWYHVYLLNPISGVKCRLP

AT3G18720.1 F-box family protein

1.1e-07

30.16

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Query:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQS----DDHSLKFFNFLEVKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR
        DL ++++ ++GL  N    IHAS+VCK+WL    S       PW+  P        +     FN    + H L+ P+ L G    +  +  GWL+VV   
Subjt:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQS----DDHSLKFFNFLEVKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR

Query:  RRRSGWYHVYLLNPISGVKCRLPPLP
          +     V+ LNP +G +  LP +P
Subjt:  RRRSGWYHVYLLNPISGVKCRLPPLP

Sequences

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CDS sequence

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TGGGAAGATCTGCCAAAGGATGTTATGGAGAAAATTGGTTTGAATCTTAATTCAACTGATTACATTCATGCCTCTGTTGTTTGCAAATCATGGCTATCACTTTTACAATC
TGATATTTCAAGACCTCAAATTCCTTGGATTTTGCTTCCTCATCAATCTGATGACCATAGCCTAAAATTCTTCAACTTTTTGGAAGTCAAATATCACATCTTAAGGTTGC
CTAAGGGTCTTGAAGGGGGATATATTTTTGGGAGTTCCAAAGGATGGCTTGTTGTTGTGTTTAGGAGAAGAAGAAGATCAGGATGGTACCATGTCTATCTTTTGAATCCA
ATCTCAGGTGTCAAGTGTAGGCTTCCGCCGCTTCCAAATTATATATCTCTT

mRNA sequence

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Protein sequence

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WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPHQSDDHSLKFFNFLEVKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRSGWYHVYLLNP
ISGVKCRLPPLPNYISL

MC04g0329 (gene) of Bitter gourd (Dali-11) v1 genome