CuGenDBv2

Gene ID	MC04g0424
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem II D2 protein
Genome location	MC04:3375289..3375495
RNA-Seq Expression	MC04g0424
Synteny	MC04g0424
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009507 - chloroplast (cellular component) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031676 - plasma membrane-derived thylakoid membrane (cellular component) GO:0042170 - plastid membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHN15789.1 photosystem II D2 protein, partial [Posidonia oceanica]

1.62e-21

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

AYQ95000.1 photosystem II protein D2, partial [Oedogonium angustistomum]

1.01e-21

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL +NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

NES45548.1 photosystem II D2 protein (photosystem q(a) protein) [Moorea sp. SIO2C4]

1.54e-21

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFG+AFS+ RWL+FFM FV V GLWMSA GI GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

RYR46406.1 hypothetical protein Ahy_A07g032143 [Arachis hypogaea]

1.86e-21

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

TYI43307.1 hypothetical protein ES332_A01G159800v1, partial [Gossypium tomentosum]

7.12e-22

71.43

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AAKDPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

TrEMBL top hits

e value

%identity

Alignment

A0A0D3LRX2 Photosystem II D2 protein (Fragment)

7.87e-22

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

A0A1B1LTR1 Photosystem II protein D2 (Fragment)

7.87e-22

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

A0A445C624 Uncharacterized protein

9.03e-22

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

A0A5D2RR28 Uncharacterized protein (Fragment)

3.45e-22

71.43

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NL A DFVS +I AAKDPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

M8BYK6 Photosystem II D2 protein

1.94e-22

71.43

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G+ GL  NLCA DFVS +I AA DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQGI-GLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

SwissProt top hits

e value

%identity

Alignment

A4QJB0 Photosystem II D2 protein

1.0e-17

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

A4QJJ4 Photosystem II D2 protein

1.0e-17

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

Q3V539 Photosystem II D2 protein

1.0e-17

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

Q4FFP4 Photosystem II D2 protein

1.0e-17

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

Q70Y08 Photosystem II D2 protein

1.0e-17

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00270.1 photosystem II reaction center protein D

7.3e-19

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Query:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK
        SQIFGVAFS+ RWL+FFM FV V GLWMSA G +GL  NL A DFVS +I AA+DPEF+TF TK+ILLN+
Subjt:  SQIFGVAFSSDRWLYFFM-FVLVIGLWMSAQG-IGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

Sequences

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CDS sequence

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TCCCAAATTTTTGGAGTTGCTTTTTCCAGTGATCGCTGGTTATATTTCTTTATGTTTGTGCTAGTAATCGGTTTATGGATGAGTGCTCAGGGTATTGGTCTGCCCTGGAA
CCTATGTGCCAAGGACTTTGTTTCTTATAAAATTAGTGCAGCAAAAGATCCTGAATTTGATACTTTCTGTACCAAAAGTATTCTCTTAAACAAG

mRNA sequence

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Protein sequence

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SQIFGVAFSSDRWLYFFMFVLVIGLWMSAQGIGLPWNLCAKDFVSYKISAAKDPEFDTFCTKSILLNK

MC04g0424 (gene) of Bitter gourd (Dali-11) v1 genome