CuGenDBv2

Gene ID	MC04g0446
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem II protein D1
Genome location	MC04:3580144..3580467
RNA-Seq Expression	MC04g0446
Synteny	MC04g0446
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAO31798.1 photosystem II protein D1, partial [Triticum aestivum]

1.80e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

CAL36284.1 photosystem II 32 kDa protein, partial [Metzgeria furcata]

2.92e-67

98.04

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII F+AAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

KAG2271720.1 hypothetical protein Bca52824_066275 [Brassica carinata]

1.99e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

KAG6621130.1 hypothetical protein I3842_Q044100, partial [Carya illinoinensis]

3.15e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

MBC9841826.1 hypothetical protein [Adiantum capillus-veneris]

2.95e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KUY9 Photosynthetic reaction centre, L/M (Fragment)

1.56e-67

98.04

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYEL+VLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

A0A7J7L722 Uncharacterized protein

1.98e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

A4H1H3 Photosystem II 32 kDa protein (Fragment)

1.41e-67

98.04

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII F+AAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

D6NI08 PsbA (Fragment)

1.85e-67

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

Q85XX9 Photosystem II protein D1 (Fragment)

8.72e-68

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

4.1e-53

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

A4QJ96 Photosystem II protein D1

4.1e-53

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

A4QJI0 Photosystem II protein D1

4.1e-53

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

P02956 Photosystem II protein D1

4.1e-53

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

Q3V554 Photosystem II protein D1

4.1e-53

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

2.9e-54

99.02

Show/hide

Query:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
        WFGVLMIPTLLTATSVFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW
Subjt:  WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREW

Query:  EL
        EL
Subjt:  EL

Sequences

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CDS sequence

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TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGTCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTC
TGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCGATATGGGAAGCTGCTTCCGTTGATGAAT
GGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTATTTTGTTTTGGGGAGAGA

mRNA sequence

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Protein sequence

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WFGVLMIPTLLTATSVFIIVFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELFCFGER

MC04g0446 (gene) of Bitter gourd (Dali-11) v1 genome