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MC04g0740 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g0740
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionU6 snRNA phosphodiesterase
Genome locationMC04:8445187..8445383
RNA-Seq ExpressionMC04g0740
SyntenyMC04g0740
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055091.1 U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]9.40e-0962.75Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL +FPN         VLDDLPI Q TR RSFP V+GN  LHV+IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
XP_004143673.1 U6 snRNA phosphodiesterase [Cucumis sativus]1.85e-0862.75Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL +FPN         VLDDLPI Q TR RSFP V+GN  LHV+IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
XP_022155865.1 U6 snRNA phosphodiesterase [Momordica charantia]1.00e-1166.67Show/hide
Query:  SPLPPPP--PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        SP PPPP  PPPPLSL  FPN       +S L DLPI QPTRFRSFP VEGN  LHV+IP
Subjt:  SPLPPPP--PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]5.15e-0958.82Show/hide
Query:  PPPPPLSLHFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPP P  LHFPN        S+LDDLPI Q TR RSFP V+GN  LH++IP
Subjt:  PPPPPLSLHFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
XP_038875355.1 U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]4.72e-0958.82Show/hide
Query:  PPPPPLSLHFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPP P  LHFPN        S+LDDLPI Q TR RSFP V+GN  LH++IP
Subjt:  PPPPPLSLHFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
TrEMBL top hitse value%identityAlignment
A0A0A0KPH5 U6 snRNA phosphodiesterase8.98e-0962.75Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL +FPN         VLDDLPI Q TR RSFP V+GN  LHV+IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
A0A1S3CTB0 U6 snRNA phosphodiesterase8.98e-0962.75Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL +FPN         VLDDLPI Q TR RSFP V+GN  LHV+IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
A0A5A7UND6 U6 snRNA phosphodiesterase4.55e-0962.75Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL +FPN         VLDDLPI Q TR RSFP V+GN  LHV+IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
A0A6J1DNL4 U6 snRNA phosphodiesterase4.85e-1266.67Show/hide
Query:  SPLPPPP--PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        SP PPPP  PPPPLSL  FPN       +S L DLPI QPTRFRSFP VEGN  LHV+IP
Subjt:  SPLPPPP--PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
A0A6J1EQH7 U6 snRNA phosphodiesterase2.24e-0758.82Show/hide
Query:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
        PPPPLSL  FPN        S LDDLPI Q  R RSFP V+GN  LH++IP
Subjt:  PPPPLSL-HFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACCGCCGGAGTTATTTCCGCCTTCGCCTCTGCCTCCGCCTCCGCCTCCGCCGCCTCTCTCACTTCATTTTCCCAATTATTTCATTTGTATACCTCTTCTCTCTGTCTT
AGATGACTTACCAATCACTCAACCCACTCGATTTCGGAGCTTCCCTCGTGTCGAAGGAAACTGTGTCCTACACGTCTTTATTCCA
mRNA sequenceShow/hide mRNA sequence
TCACCGCCGGAGTTATTTCCGCCTTCGCCTCTGCCTCCGCCTCCGCCTCCGCCGCCTCTCTCACTTCATTTTCCCAATTATTTCATTTGTATACCTCTTCTCTCTGTCTT
AGATGACTTACCAATCACTCAACCCACTCGATTTCGGAGCTTCCCTCGTGTCGAAGGAAACTGTGTCCTACACGTCTTTATTCCA
Protein sequenceShow/hide protein sequence
SPPELFPPSPLPPPPPPPPLSLHFPNYFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVFIP