CuGenDBv2

Gene ID	MC04g0781
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L16, chloroplastic
Genome location	MC04:10231167..10231384
RNA-Seq Expression	MC04g0781
Synteny	MC04g0781
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ALI90860.1 Rpl16, partial [Oecopetalum mexicanum]

3.16e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKPSRILYEMGGV+EN+ARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

PRQ49134.1 putative ribosomal protein L16 [Rosa chinensis]

3.99e-31

76.71

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+LVT+RPTETCMGSGKG PEYWV+IVKP RILYEM GV+ENIAR+ IS+A SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

QJQ26673.1 ribosomal protein L16 [Euphorbia helioscopia]

2.30e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK+ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

YP_009630129.1 ribosomal protein L16 [Euphorbia tirucalli]

2.30e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK+ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

YP_010119341.1 ribosomal protein L16 [Camellia tachangensis]

2.30e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VT+RPTET MGSGKG PEYWV++VKPSRILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

TrEMBL top hits

e value

%identity

Alignment

A0A0S0ZKA1 50S ribosomal protein L16, chloroplastic (Fragment)

1.53e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKPSRILYEMGGV+EN+ARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

A0A2P6RRS0 Putative ribosomal protein L16

1.93e-31

76.71

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+LVT+RPTETCMGSGKG PEYWV+IVKP RILYEM GV+ENIAR+ IS+A SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

A0A482FFZ4 50S ribosomal protein L16, chloroplastic

1.11e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK+ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

A0A6M4AF13 50S ribosomal protein L16, chloroplastic

1.11e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK+ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

A0A7U1BFG4 Ribosomal protein L16

1.11e-30

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VT+RPTET MGSGKG PEYWV++VKPSRILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

SwissProt top hits

e value

%identity

Alignment

B1NWI7 50S ribosomal protein L16, chloroplastic

1.9e-25

78.08

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Q0ZIY1 50S ribosomal protein L16, chloroplastic

1.2e-24

75.34

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR   RG +IWVRIF D+ VT+RPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Q49KW1 50S ribosomal protein L16, chloroplastic

1.2e-24

75.34

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR   RG +IWVRIF D+ VT+RPTET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Q4VZN1 50S ribosomal protein L16, chloroplastic

9.2e-25

76.71

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VTLRPTET MGSGKG PEYWV++VKP RILYEM GV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Q68RW9 50S ribosomal protein L16, chloroplastic

2.0e-24

75.34

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR A RG +IWVRIF D+ VT+RP ET MGSGKG PEYWV++VKP RILYEMGGV+ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

4.5e-19

60.27

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR   RG  + V IF+D+ VT+RP ET MG GKG P +WV++VKP +I+YEMGGVSE +AR+ ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

ATCG00790.1 ribosomal protein L16

1.2e-24

72.6

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+MTR   RG +IWVRIF D+ VT+RP ET MGSGKG PEYWV++VKP +ILYEMGGV ENIARK ISIA SK
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

ATMG00080.1 ribosomal protein L16

1.5e-09

42.47

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Query:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK
        R+M+    R  +IWVR+F+D  +T +PTE  MG GKG P  W++ V   +I +EM GVS   AR+  ++A  K
Subjt:  RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKG-PEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

Sequences

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CDS sequence

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CGTTCAATGACACGAGGTGCACTACGTGGCGAGGAAATATGGGTACGTATATTTTCAGATAGACTTGTTACACTAAGACCTACAGAAACATGTATGGGATCAGGGAAAGG
ACCCGAATATTGGGTATCTATTGTTAAACCAAGTAGAATACTTTATGAAATGGGCGGAGTATCTGAAAATATAGCTAGAAAAACTATTTCAATAGCATTGTCCAAG

mRNA sequence

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Protein sequence

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RSMTRGALRGEEIWVRIFSDRLVTLRPTETCMGSGKGPEYWVSIVKPSRILYEMGGVSENIARKTISIALSK

MC04g0781 (gene) of Bitter gourd (Dali-11) v1 genome