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MC04g0818 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g0818
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationMC04:12415271..12415396
RNA-Seq ExpressionMC04g0818
SyntenyMC04g0818
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALO21933.1 RpoA [Cucurbita cordata]4.21e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
YP_009456093.1 RNA polymerase alpha subunit [Momordica charantia]4.21e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
YP_009752022.1 RNA polymerase subunit alpha [Cionosicys macranthus]4.21e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
YP_009752107.1 RNA polymerase subunit alpha [Dendrosicyos socotranus]4.21e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
YP_009752867.1 RNA polymerase subunit alpha [Baijiania yunnanensis]4.21e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
TrEMBL top hitse value%identityAlignment
A0A0S2IDS0 DNA-directed RNA polymerase subunit alpha2.04e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
A0A0S2IF96 DNA-directed RNA polymerase subunit alpha2.04e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
A0A514YKX0 DNA-directed RNA polymerase subunit alpha2.04e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
A0A6H0EP10 DNA-directed RNA polymerase subunit alpha2.04e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
A0A6H0ES49 DNA-directed RNA polymerase subunit alpha2.04e-1797.62Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
SwissProt top hitse value%identityAlignment
Q09G14 DNA-directed RNA polymerase subunit alpha9.8e-1177.5Show/hide
Query:  NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        N+  VTLP FTFH++LAK+RK +KEIALKYIFIDQSELPP
Subjt:  NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Q09ME5 DNA-directed RNA polymerase subunit alpha4.9e-1073.81Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        ++N+ KVTLP FTFH++LAKL KKKKEIALK IFIDQSE+ P
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Q2L938 DNA-directed RNA polymerase subunit alpha1.7e-1073.81Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        ++N+  VTLP F FH++L KL KKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Q49KW6 DNA-directed RNA polymerase subunit alpha1.7e-1076.19Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        ++N+ KVTLP FTFH++LAKLRK KKEIALK IFIDQ ELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Q4VZK3 DNA-directed RNA polymerase subunit alpha3.0e-1595.24Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
        K+NK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP
Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha2.1e-0861.36Show/hide
Query:  KHNKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPP
        ++N+ +VTLP F FH +L  LRKKK  KE+A +YIFIDQ ELPP
Subjt:  KHNKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACACAATAAACAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCCAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCA
ATCAGAATTGCCTCCC
mRNA sequenceShow/hide mRNA sequence
AAACACAATAAACAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCCAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCA
ATCAGAATTGCCTCCC
Protein sequenceShow/hide protein sequence
KHNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP