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MC04g0887 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g0887
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationMC04:15848274..15848492
RNA-Seq ExpressionMC04g0887
SyntenyMC04g0887
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.40e-2880.82Show/hide
Query:  NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME
        NHT W PA+EGVFKL TDASF S DFNAGL  IIIRDHRGQV+ SATKYL +VASVDD E LAAVEGLRVAME
Subjt:  NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]2.40e-1655.07Show/hide
Query:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM
        W P  + ++K+NTDASF ++D +AGL IIIR+ RGQV+ SATKYL N+ SVD  E + AVEGL++A ++
Subjt:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.01e-1757.97Show/hide
Query:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM
        W P  EG++K+NTDASF ++D +AGL III + RGQV+ +ATKYL N+ SVD  E +AAVEGL++A E+
Subjt:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM

XP_042968982.1 uncharacterized protein LOC122301652 [Carya illinoinensis]5.00e-0938.36Show/hide
Query:  NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME
        NH   W+P   G  KLN D + FS  F+AG+ +I+RDH G V+V+ATK    V+    +E +A + G+++ ++
Subjt:  NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME

XP_042988669.1 uncharacterized protein LOC122316201 [Carya illinoinensis]1.93e-0939.73Show/hide
Query:  NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME
        NH   W+P   G  KLN D + FS  F+AG+ +I+RDH G V+V+A+K    V+SV+ +E +  + GL++  +
Subjt:  NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME

TrEMBL top hitse value%identityAlignment
A0A1E5W9V9 Uncharacterized protein5.72e-0941.43Show/hide
Query:  HTTWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAM
        H++W P ++G  K+NTDASF    F+ G   +IRD  G+V+ +  ++  NV+ V  +E LAA  GL VA+
Subjt:  HTTWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAM

A0A3L6S0G2 RNase H domain-containing protein8.93e-0943.48Show/hide
Query:  TWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME
        TW    EG  K+NTDA+F +        ++IRDH G V+ +AT++LG+V  V   E LAA EGL + +E
Subjt:  TWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME

A0A6J1CDQ4 uncharacterized protein LOC1110105336.80e-2980.82Show/hide
Query:  NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME
        NHT W PA+EGVFKL TDASF S DFNAGL  IIIRDHRGQV+ SATKYL +VASVDD E LAAVEGLRVAME
Subjt:  NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAME

A0A6J1CIF1 uncharacterized protein LOC1110112371.16e-1655.07Show/hide
Query:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM
        W P  + ++K+NTDASF ++D +AGL IIIR+ RGQV+ SATKYL N+ SVD  E + AVEGL++A ++
Subjt:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM

A0A6J1DAR4 uncharacterized protein LOC1110189543.39e-1757.97Show/hide
Query:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM
        W P  EG++K+NTDASF ++D +AGL III + RGQV+ +ATKYL N+ SVD  E +AAVEGL++A E+
Subjt:  WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATCATACTACTTGGTACCCTGCAAAAGAGGGGGTCTTTAAATTAAACACAGATGCTTCTTTTTTCTCGACTGATTTTAATGCAGGTTTGAGAATCATTATAAGAGATCA
TAGAGGTCAAGTAATAGTTTCGGCTACAAAATACTTGGGGAATGTAGCATCCGTGGATGATGTTGAAGAGCTTGCAGCAGTGGAAGGCCTTCGTGTTGCGATGGAAATG
mRNA sequenceShow/hide mRNA sequence
AATCATACTACTTGGTACCCTGCAAAAGAGGGGGTCTTTAAATTAAACACAGATGCTTCTTTTTTCTCGACTGATTTTAATGCAGGTTTGAGAATCATTATAAGAGATCA
TAGAGGTCAAGTAATAGTTTCGGCTACAAAATACTTGGGGAATGTAGCATCCGTGGATGATGTTGAAGAGCTTGCAGCAGTGGAAGGCCTTCGTGTTGCGATGGAAATG
Protein sequenceShow/hide protein sequence
NHTTWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM