; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC04g0987 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g0987
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionHMG-Y-related protein A
Genome locationMC04:17808966..17809973
RNA-Seq ExpressionMC04g0987
SyntenyMC04g0987
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR005818 - Linker histone H1/H5, domain H15
IPR017956 - AT hook, DNA-binding motif
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150116.1 HMG-Y-related protein A [Cucumis sativus]4.71e-7367.74Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAP VAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC

XP_008466945.1 PREDICTED: HMG-Y-related protein A [Cucumis melo]6.69e-7367.74Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAP VAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC

XP_022953026.1 HMG-Y-related protein B-like [Cucurbita moschata]7.53e-7265.95Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MAT D LN    PPPPAPSLPHYPEMIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

XP_023545599.1 HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]7.53e-7266.49Show/hide
Query:  MAT-DDHLNPP--PPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MAT D H NPP  PPPAPSLPHYPEMIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MAT-DDHLNPP--PPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

XP_038906720.1 HMG-Y-related protein A-like [Benincasa hispida]1.59e-7367.03Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AI+++NDKNG +KSAITKQIESTYGDLPPAF+TLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

TrEMBL top hitse value%identityAlignment
A0A0A0KPG4 H15 domain-containing protein2.28e-7367.74Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAP VAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC

A0A1S3CSD8 HMG-Y-related protein A3.24e-7367.74Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAP VAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC

A0A5D3E3W3 HMG-Y-related protein A3.24e-7367.74Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MATDD LN    PPPPAPSLPHYPEMIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTSAP VAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAP-VAGPPRGRGRPPKVKPAVAPIGC

A0A6J1GLV6 HMG-Y-related protein B-like3.64e-7265.95Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MAT D LN    PPPPAPSLPHYPEMIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

A0A6J1JSA2 HMG-Y-related protein B-like3.64e-7265.95Show/hide
Query:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP
        MAT D LN    PPPPAPSLPHYPEMIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNYM+PDPNAPPKRGRGRP
Subjt:  MATDDHLN---PPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRP

Query:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC
        PKP                                             RPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Subjt:  PKP---------------------------------------------RPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

SwissProt top hitse value%identityAlignment
Q00423 HMG-Y-related protein A7.6e-2856.69Show/hide
Query:  MATDDHLNPPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKP
        MAT++ +N P     SLP YPEMI+  ++A+N+ NG+NKSAI+K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNYM+ DPNAPPKRGRGRPPKP
Subjt:  MATDDHLNPPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKP

Query:  RPPKYPKPAPTSAPVAGPPRGRGRPPK
        + P  P        V  PPR RGRPPK
Subjt:  RPPKYPKPAPTSAPVAGPPRGRGRPPK

Q10370 HMG-Y-related protein B (Fragment)1.8e-2158.16Show/hide
Query:  AINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTSAPVAGPPRGRGRPPK
        A+N+ +G+NKSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYM+ DPNAPPKRGRGRPPKP+ P  P        V  PPR RGRPPK
Subjt:  AINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTSAPVAGPPRGRGRPPK

Q43386 HMG-Y-related protein A5.3e-2956.69Show/hide
Query:  PAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTS
        P+ SLP YP+MIM AI+++NDKNG NK+ I K IEST   LPP+  TLLS+HL+ MK+TGQL+ +KNNYM+PDP+APPKRGRGRPPK +       A  +
Subjt:  PAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTS

Query:  APVA-----GPPRGRGRPPKVKPAVAP
           A      PPR RGRPPK K    P
Subjt:  APVA-----GPPRGRGRPPKVKPAVAP

Q9FYS5 HMG-Y-related protein A7.3e-3158.46Show/hide
Query:  MATDDHLNPPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPD-PNAPPKRGRGRPPK
        MATD+   P P     +P YPEMI++AI+ ++DK+G+NKSAI+K IE  YG LPPA  +LL+ HL  MK++G+L+FLKNNY R   P+APPKRGRGRPPK
Subjt:  MATDDHLNPPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPD-PNAPPKRGRGRPPK

Query:  PRPPKYPKPAPTSAPVAGPPRGRGRPPKVK
         R P  P PAP S    G  RGRGRPPK K
Subjt:  PRPPKYPKPAPTSAPVAGPPRGRGRPPKVK

Arabidopsis top hitse value%identityAlignment
AT1G14900.1 high mobility group A3.7e-3056.69Show/hide
Query:  PAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTS
        P+ SLP YP+MIM AI+++NDKNG NK+ I K IEST   LPP+  TLLS+HL+ MK+TGQL+ +KNNYM+PDP+APPKRGRGRPPK +       A  +
Subjt:  PAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAPTS

Query:  APVA-----GPPRGRGRPPKVKPAVAP
           A      PPR RGRPPK K    P
Subjt:  APVA-----GPPRGRGRPPKVKPAVAP

AT1G48620.1 high mobility group A51.3e-1137.78Show/hide
Query:  PPPPAPSLPH--YPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPK---
        P PP PS+ H  Y +MI +AI A+N+ +G++K AI++ IE  Y  +P A   LL+HHL  +K +G L+ +K +Y +     PP       P   PP+   
Subjt:  PPPPAPSLPH--YPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPK---

Query:  -------YPKPAPTSAPVAGPPRGRGRPPKVKPAV
                P P   S+      RGRGRPPK KP V
Subjt:  -------YPKPAPTSAPVAGPPRGRGRPPKVKPAV

AT3G18035.1 winged-helix DNA-binding transcription factor family protein5.6e-1031.82Show/hide
Query:  PAPSLPH--YPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPP--------------------
        P  S+PH  Y EMI +AI A+N+ +G++K AI++ IE  Y  L  A   LL+HHL  +K +G L  +K +Y     + PP                    
Subjt:  PAPSLPH--YPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPP--------------------

Query:  -------------------KRGRGRPPKPRPPKYPKPAPTSAPVAGPPRGRGRP
                           KRGRGRPPKP+P   P+P     P     +  G+P
Subjt:  -------------------KRGRGRPPKPRPPKYPKPAPTSAPVAGPPRGRGRP

AT5G08780.1 winged-helix DNA-binding transcription factor family protein1.3e-0642.42Show/hide
Query:  PSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNN
        P  P Y  MI  AI  +N + GA++ AI++ I+S Y +LP A T LLSHHL  + +  ++L   NN
Subjt:  PSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCGACGACCACCTCAACCCCCCCCCTCCGCCGGCCCCCTCCCTCCCCCACTACCCCGAGATGATTATGTCGGCGATCGACGCCATCAACGACAAAAACGGGGC
GAACAAATCGGCGATAACGAAGCAAATCGAGTCCACCTACGGCGATCTACCGCCGGCTTTCACCACTCTCCTCTCCCACCACTTAGACGTGATGAAGCAGACCGGGCAGC
TCCTCTTCCTAAAAAACAACTACATGAGGCCAGATCCCAACGCGCCGCCCAAGCGCGGCCGCGGCCGCCCCCCCAAGCCCCGCCCGCCGAAGTACCCCAAGCCGGCTCCG
ACGTCGGCTCCGGTCGCCGGCCCGCCCAGAGGCAGAGGCCGGCCGCCCAAGGTAAAGCCGGCCGTCGCCCCAATTGGGTGC
mRNA sequenceShow/hide mRNA sequence
GGAAAGAGAGAAAGGACAACAGATTTGGATGCAAAACGAACTTAAATCGATAAGCCTAGAAAGAATATAATATAATATAATGGAAATAAAATTGGGGGATGATGATGATG
TGATAGAAAATGAAAAAGAAAAAAGAAAAAAGAAAAAAGGAAAAATGATCCTGGTAGTAGTGTAGTAGGAGCACGGAATACTGGGAGTGGTGGTTATCTGAAACTTGCAA
GTAGTTTTTGGTACTAAAAAAGCAAAGGGCGTGGTTGTGGGGGCCCACATCCCCTCTCCACGTCATCGATCCGCGTCGTAAAACACATCACGGCAATTCCAGCCCTGGGA
TCCTCCCCCGGAGCTCTCTATCCCCAGCCGTCCGATCTGTCCTCCCTCCACCCCCGATCCCCTTCTCCCCCTATTTTCCCTTTTTAAATCCTCCCCTTTCCCCTTCCTCC
ATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCATCACTCGCTCTCTCTCTCTCCCTCTATCTCTAAATCCGCCATGGCCACCGACGACCACCTCAACCCCCCC
CCTCCGCCGGCCCCCTCCCTCCCCCACTACCCCGAGATGATTATGTCGGCGATCGACGCCATCAACGACAAAAACGGGGCGAACAAATCGGCGATAACGAAGCAAATCGA
GTCCACCTACGGCGATCTACCGCCGGCTTTCACCACTCTCCTCTCCCACCACTTAGACGTGATGAAGCAGACCGGGCAGCTCCTCTTCCTAAAAAACAACTACATGAGGC
CAGATCCCAACGCGCCGCCCAAGCGCGGCCGCGGCCGCCCCCCCAAGCCCCGCCCGCCGAAGTACCCCAAGCCGGCTCCGACGTCGGCTCCGGTCGCCGGCCCGCCCAGA
GGCAGAGGCCGGCCGCCCAAGGTAAAGCCGGCCGTCGCCCCAATTGGGTGC
Protein sequenceShow/hide protein sequence
MATDDHLNPPPPPAPSLPHYPEMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPRPPKYPKPAP
TSAPVAGPPRGRGRPPKVKPAVAPIGC