; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC04g1006 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g1006
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Genome locationMC04:18073077..18076081
RNA-Seq ExpressionMC04g1006
SyntenyMC04g1006
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027248 - Small nuclear ribonucleoprotein Sm D2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001241022.1 uncharacterized protein LOC100793233 [Glycine max]1.38e-6898.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

XP_003630987.1 small nuclear ribonucleoprotein Sm D2 [Medicago truncatula]1.38e-6898.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

XP_019464922.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Lupinus angustifolius]6.84e-6998.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

XP_022146455.1 small nuclear ribonucleoprotein Sm D2-like [Momordica charantia]2.04e-70100Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

XP_042477120.1 small nuclear ribonucleoprotein Sm D2 isoform X2 [Macadamia integrifolia]2.38e-6999.07Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDAT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

TrEMBL top hitse value%identityAlignment
A0A1S2YDS1 Small nuclear ribonucleoprotein Sm D26.69e-6998.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

A0A445F826 Small nuclear ribonucleoprotein Sm D26.69e-6998.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

A0A6A4QKF7 Small nuclear ribonucleoprotein Sm D26.69e-6997.22Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPM+ED  TKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

A0A6J1CZE7 Small nuclear ribonucleoprotein Sm D29.87e-71100Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

G7LBH6 Small nuclear ribonucleoprotein Sm D26.69e-6998.15Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

SwissProt top hitse value%identityAlignment
P62316 Small nuclear ribonucleoprotein Sm D25.4e-4584.47Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VL
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNP
        RNP
Subjt:  RNP

P62317 Small nuclear ribonucleoprotein Sm D25.4e-4584.47Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VL
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNP
        RNP
Subjt:  RNP

Q18786 Probable small nuclear ribonucleoprotein Sm D28.1e-4178.64Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        M  +     E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V+
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNP
        +NP
Subjt:  RNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D25.4e-4584.47Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VL
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNP
        RNP
Subjt:  RNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D22.0e-4488.54Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hitse value%identityAlignment
AT2G47640.1 Small nuclear ribonucleoprotein family protein1.0e-5191.74Show/hide
Query:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS
        MS+PMEED    K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDS
Subjt:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein5.5e-5392.59Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein5.5e-5392.59Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein1.0e-5191.74Show/hide
Query:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS
        MS+PMEED    K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDS
Subjt:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT3G62840.2 Small nuclear ribonucleoprotein family protein5.5e-5392.59Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGACCAATGGAGGAAGATGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTAAAAACAACACTCAGGTCCT
CATAAATTGTCGCAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACCGAGGTACCAAAAA
CTGGGAAGGGCAAGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCCGTCATTATCGTTCTTAGGAATCCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
GTTAAAGCCCTTTCACTTCCCTTCGGCCCATTGGTACCCAAACCCAACAACCAATTTACTTTTAAATTCTATCAAATCTCAGCCAACCGAAATTTCTGTCTCTCTAATCC
ACACCGTTCGTTCGCCTTCTTAGTTCTTCCCATCCCACGCCCTAATTTCTTCTCCTTCTTCTTCTCAATTGCTTCTCACGACCAGCATCACTCCGAGGACGACGCTGAAA
ATCAATCCCTAATTACAAGATGAGCCGACCAATGGAGGAAGATGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTA
AAAACAACACTCAGGTCCTCATAAATTGTCGCAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATG
TGGACCGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCCGTCATTATCGTTCT
TAGGAATCCCAAGTAAGAAAAGCTGGCTATCTCATAATATGTTCAGTTTGAATTCTTCTATCAGACTCCTTACGCTTGCTGATGAGAAACTACAAACTTTCATTTGATAG
TCTAACCTTCTGCCAAGTTTGTTTGGAGCTATGTTAGTTGTAGTTCTTTTGAATTTCTCTCTTTTGTTTCCAAGCCGTTTGCCAAATAGTGTAACTATAGAACTCCATGA
AGTGTATCAGTCAGGTGTCAGAGATTGTTGAGTAAAAATCAGATACTTCCTGCAATATTTGTGCTTTAACGTGTGTAGCAGCCTTGGTTAAGGACGTCATTTTGTTTTGT
TCGACAAGTGATATTATCTTTCAGAATTATGAGAATCCGGGCTTGGAAGATAAGGTGCTATTCCTGGAGTCTTGATTTTCAAATCAAAGAATTTGGACTGTTGAGGGTAC
CAGTCCGACATGTCGATGTTTACATTAGAAATTTAGAAATAACATCAATTGCACGTGCACGTGTACACAAAATTACTGTATTTAATATATGCGAATGGATAGCAAGTATG
GTTAATCGTGCTTTCATGTTGGTTTGATTATAGTATTTGGTCGATACACTGATTAGTTGGC
Protein sequenceShow/hide protein sequence
MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK