CuGenDBv2

Gene ID	MC04g1106
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	MC04:19122186..19128292
RNA-Seq Expression	MC04g1106
Synteny	MC04g1106
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008465711.1 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]

1.34e-160

96.49

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG
        GTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG

XP_022157893.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Momordica charantia]

2.54e-165

99.56

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_022939256.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita moschata]

4.69e-161

95.2

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN S++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_022993779.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita maxima]

8.11e-162

95.63

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN S++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEKQGG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_038907229.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Benincasa hispida]

1.34e-160

96.49

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG
        GTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

6.50e-161

96.49

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG
        GTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

6.50e-161

96.49

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG
        GTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLG

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

1.23e-165

99.56

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

2.27e-161

95.2

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN S++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

3.93e-162

95.63

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPRTHIDDEYAN S++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL
        LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEKQGG KSIELKEIGPRFELRLYQIKL
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKL

Query:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        GTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  GTVDQTEAQNEWVIRPYMKTTKKRKFLGD

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

2.0e-73

58.74

Show/hide

Query:  HIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVT
        H+DDEY      DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV 
Subjt:  HIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVT

Query:  RHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ
        RH+I D   +GT  EA PH+I++ F+++LG+R ++IL++LFPVPK D++RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q
Subjt:  RHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ

Query:  -TEAQNEWVIRPYMKTTKKRKFL
           A  EW   PY  T  KR FL
Subjt:  -TEAQNEWVIRPYMKTTKKRKFL

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-73

58.93

Show/hide

Query:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV
        +H+DDEY      DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV
Subjt:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV

Query:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD
         RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++
Subjt:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD

Query:  Q-TEAQNEWVIRPYMKTTKKRKFL
        Q   A  EW   PY  T +KR FL
Subjt:  Q-TEAQNEWVIRPYMKTTKKRKFL

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-73

58.93

Show/hide

Query:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV
        +H+DDEY      DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV
Subjt:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV

Query:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD
         RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++
Subjt:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD

Query:  Q-TEAQNEWVIRPYMKTTKKRKFL
        Q   A  EW   PY  T +KR FL
Subjt:  Q-TEAQNEWVIRPYMKTTKKRKFL

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-73

58.93

Show/hide

Query:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV
        +H+DDEY      DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV
Subjt:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV

Query:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD
         RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++
Subjt:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD

Query:  Q-TEAQNEWVIRPYMKTTKKRKFL
        Q   A  EW   PY  T +KR FL
Subjt:  Q-TEAQNEWVIRPYMKTTKKRKFL

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-73

58.93

Show/hide

Query:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV
        +H+DDEY      DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV
Subjt:  THIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVV

Query:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD
         RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++
Subjt:  TRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVD

Query:  Q-TEAQNEWVIRPYMKTTKKRKFL
        Q   A  EW   PY  T +KR FL
Subjt:  Q-TEAQNEWVIRPYMKTTKKRKFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

2.0e-108

76.96

Show/hide

Query:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL
        +VPR+HIDDEYAN +E DPKIL+TTSR+PSAPL +F KELK VFPN+QR+NRG QVISEIIET R+H+FTDVILVHEHRGVPDGLI+SHLPFGPTAYFGL
Subjt:  SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGL

Query:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEK-QGGVKSIELKEIGPRFELRLYQIK
        LNVVTRH+I DKK++G MPE YPH+I NNFTT++G+R  NILKH+FP PK D KR++TF+NQSDYISFR+H+Y+K +GG KSIELKEIGPRFELRLYQ+K
Subjt:  LNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEK-QGGVKSIELKEIGPRFELRLYQIK

Query:  LGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        LGTV+Q EA+ EWVIRPYM T+KKRKF+G+
Subjt:  LGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

AT4G01560.1 Ribosomal RNA processing Brix domain protein

5.6e-39

40.18

Show/hide

Query:  EVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAM
        E+ PK+L+TT R  S        EL  V PN+    RG   + +I+E     +FT +I+VH +R  PD L++  LP GPTA+F L N+V R +IK+    
Subjt:  EVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAM

Query:  GTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPD--TKRVITFANQSDYISFRHHIY--------EKQGGVKSIE--LKEIGPRFELRLYQIKLGTV
        G      P ++LNNFTT+LG R     + LFP P P+   +RV+TF NQ D+I FRHH Y          +G  ++I+  L+E GPRF L+L  ++ GT 
Subjt:  GTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPD--TKRVITFANQSDYISFRHHIY--------EKQGGVKSIE--LKEIGPRFELRLYQIKLGTV

Query:  DQTEAQNEWVIRPYMKTTKKRKFL
        D    + EWV +P M T+++R FL
Subjt:  DQTEAQNEWVIRPYMKTTKKRKFL

Sequences

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CDS sequence

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mRNA sequence

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TCAGTCCCGAGGACCCACATTGATGATGAGTATGCAAATACTTCCGAAGTTGATCCAAAAATTTTGATAACTACATCTCGGGATCCAAGTGCACCTTTGACACAGTTTGC
AAAGGAATTAAAAATTGTGTTTCCCAATGCTCAACGAATGAATCGTGGTGGTCAGGTTATCTCAGAGATTATAGAGACCTGTCGTGCTCACGAGTTCACTGACGTTATTT
TAGTTCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTCAGCCATTTACCTTTTGGTCCAACTGCATATTTCGGATTGTTGAATGTGGTGACGAGACATGAAATTAAG
GACAAAAAGGCTATGGGAACAATGCCTGAGGCCTATCCGCACATAATTTTGAACAATTTTACCACAAAGTTGGGTGAAAGGACAGCCAACATCTTAAAGCATCTATTTCC
TGTGCCGAAGCCAGATACTAAACGTGTGATTACTTTTGCCAATCAGTCTGATTATATTTCATTCAGGCATCATATTTATGAGAAGCAAGGGGGTGTTAAATCAATTGAGC
TGAAGGAGATCGGTCCTCGGTTTGAATTGCGATTGTATCAGATCAAGTTAGGAACTGTTGATCAAACGGAAGCTCAGAATGAATGGGTGATTAGGCCATACATGAAAACA
ACCAAGAAACGCAAGTTTCTTGGTGATTGAGAAACAGCTAAAGTAAGCAGCTTATTTTCTTTTGCACAATCACATTGTTTTTCTAAAGGTTATATTTTGTTGGGTTGGCA
ATGCCAAATTTTCTCTAGATTATTGACAGATTTAGCTGAATCTTTATATTAGAAGTCAGTTTTCTTGGTGGAGAAGTAAAAGGGAACGAGTCTGACTTTTTGTATTCTTC
ACGTCCTAGATTACGTTTGAAAAACATGAAAGTTGGTGAAGGATTAAACAAAACACAGAATGAGAATGAGAATTATCATTCGAAAATACCAAATGAATGATTAGATTGGG
TGAAGCCTCCATACTTACCCGTGTATGAGATTGTTTTTCTTTAATATCTTTACGTCTTATCGGTG

Protein sequence

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SVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIK
DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKT
TKKRKFLGD

MC04g1106 (gene) of Bitter gourd (Dali-11) v1 genome