CuGenDBv2

Gene ID	MC04g1139
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	nucleolin
Genome location	MC04:19447796..19448356
RNA-Seq Expression	MC04g1139
Synteny	MC04g1139
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]

2.16e-90

80.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD       DD D+E  SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.79e-91

82.05

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

XP_022141565.1 uncharacterized protein LOC111011897 [Momordica charantia]

4.73e-118

100

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
        MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG

Query:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
Subjt:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

XP_022939254.1 nucleolin [Cucurbita moschata]

2.90e-89

82.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK    SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

XP_023550367.1 nucleolin [Cucurbita pepo subsp. pepo]

1.07e-87

81.03

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLK ++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+ NDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

2.59e-82

79.38

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Query:  MDFRKKAGGSGNDDEQ--VEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPA-IENLPVDG
        MD RKK G  GNDDEQ  +EQLLQAAQDDL+LKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+PP  IENL VDG
Subjt:  MDFRKKAGGSGNDDEQ--VEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPA-IENLPVDG

Query:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ESQSILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD++  +E  SSDED +DR KERRKKKA
Subjt:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.29e-82

79.9

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Query:  MDFRKKAGGSGNDDEQ--VEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPA-IENLPVDG
        MD RKK G  GNDDEQ  +EQLLQAAQDDLMLKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+PP  IENL VDG
Subjt:  MDFRKKAGGSGNDDEQ--VEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPA-IENLPVDG

Query:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ESQSILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD++  +E  SSDED +DR KERRKKKA
Subjt:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A6J1CIG2 uncharacterized protein LOC111011897

2.29e-118

100

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
        MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG

Query:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
Subjt:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A6J1FGM0 nucleolin

1.40e-89

82.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK    SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

4.09e-87

80.51

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAA   RNPR S+    SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSR----SDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDA RLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

7.4e-21

43.45

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Query:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL
        G ++++VEQLLQAAQD+++LKL++DSH SR S +YLD DL  RF AL+S+         +  RP     P     +E  P          +DL  RFAAL
Subjt:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL

Query:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS
        K SLPS++      + +++    D   E+ EV+KLIQWA DAARLDPSP SD +     D DDE+ S+
Subjt:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS

Sequences

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CDS sequence

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ATGGATTTCAGAAAGAAGGCTGGGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGACGATCTCATGCTCAAATTGACTCTCGATTCCCA
CATGTCTCGCGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTCAGATCGCGTCCTTCCTCCGCCGCCGCCGCCGCTCCACGCAATCCACGGC
CTTCTCGATCGGATTTGCCGTCGAAGCCACCGGCGATTGAAAATCTTCCTGTCGATGGCGAATCTCAGTCGATTCTCGGTGACGATCTCGCTACTAGATTCGCTGCTCTG
AAGGCGTCTTTGCCTTCCTCGACTCCTCCGCCTCCGTCGTCGATGCCTAACGACGTTGATAGCGAGGATGAAGAGGATGAGGTCGAGAAGTTGATTCAGTGGGCCAAGGA
TGCTGCTCGGCTCGATCCTTCACCGCCATCTGATCAAGACGACGACGACGGCGACGACGAGTCTAGTAGTTCCGATGAAGATGCCGACGATCGGAGGAAAGAACGTCGGA
AAAAGAAGGCG

mRNA sequence

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Protein sequence

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MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL
KASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

MC04g1139 (gene) of Bitter gourd (Dali-11) v1 genome