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MC04g1463 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC04g1463
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionglycine-rich RNA-binding protein RZ1C-like
Genome locationMC04:22521007..22521150
RNA-Seq ExpressionMC04g1463
SyntenyMC04g1463
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602289.1 Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia]3.31e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

XP_022133548.1 glycine-rich RNA-binding protein RZ1C-like [Momordica charantia]1.02e-17100Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

XP_022961758.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata]3.31e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

XP_022990423.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima]3.31e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

XP_023544240.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo]3.31e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

TrEMBL top hitse value%identityAlignment
A0A6J1BW89 glycine-rich RNA-binding protein RZ1C-like isoform X17.83e-0857.89Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW ISER+L++AFSR+G+I++T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

A0A6J1BZF5 glycine-rich RNA-binding protein RZ1C-like4.95e-18100Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

A0A6J1CFE7 glycine-rich RNA-binding protein RZ1C-like isoform X14.34e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA +EE+ ++VGGLSW I+ER+L++AFSRFG+IID+++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

A0A6J1HB93 glycine-rich RNA-binding protein RZ1C-like1.60e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

A0A6J1JS04 glycine-rich RNA-binding protein RZ1C1.60e-0860.53Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

SwissProt top hitse value%identityAlignment
P49311 Glycine-rich RNA-binding protein GRP2A4.6e-0445.45Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        E+  +VGGL+W   ER L+ AFS+FG ++D+++
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

Q14103 Heterogeneous nuclear ribonucleoprotein D01.6e-0444.12Show/hide
Query:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID
        A++EE+++++GGLSW  ++++L+D FS+FG ++D
Subjt:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID

Q60668 Heterogeneous nuclear ribonucleoprotein D01.6e-0444.12Show/hide
Query:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID
        A++EE+++++GGLSW  ++++L+D FS+FG ++D
Subjt:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID

Q9JJ54 Heterogeneous nuclear ribonucleoprotein D02.7e-0444.12Show/hide
Query:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID
        A++EE+++++GGLSW  ++++L+D FS+FG ++D
Subjt:  ARKEEFEVYVGGLSWCISERELQDAFSRFGRIID

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.1e-0442.42Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        E  ++VGGLSW ++ER+L+  F R+G+I + ++
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.1e-0442.42Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        E  ++VGGLSW ++ER+L+  F R+G+I + ++
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRV

AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-0542.42Show/hide
Query:  EVYVGGLSWCISERELQDAFSRFGRIIDTRVTF
        ++++GGLSW + E+ L+DAFS FG + + R+ +
Subjt:  EVYVGGLSWCISERELQDAFSRFGRIIDTRVTF

AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain9.4e-0534.88Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIF
        M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V    F
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIF

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain7.2e-0550Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV
        MA KE   ++VGGLS  +++R+L+ AFSRFG I+D ++
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCG
GGTAACATTTCGTATTTTTGTCATTTTTCCGTGC
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCG
GGTAACATTTCGTATTTTTGTCATTTTTCCGTGC
Protein sequenceShow/hide protein sequence
MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVTFRIFVIFPC