CuGenDBv2

Gene ID	MC04g1505
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	MC04:22882024..22887749
RNA-Seq Expression	MC04g1505
Synteny	MC04g1505
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

3.57e-173

87.63

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNNS+   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSYSLNMSTDFIPMSVFSES               GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES ++TK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]

1.62e-175

88.66

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSY+LNMSTDFIPMSVFSES         +S  +LGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

1.77e-173

87.97

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSY+LNMSTDFIPMSVFSES               GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]

2.83e-193

95.53

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSYSLNMSTDFIPMSVFSESPP             GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

1.79e-177

90.66

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDRCSSRKLQ NNNSV   GTDFLETNKADRAMWLLKCPQ VTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSYSLNMSTDFIPMSVFSES               GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
        GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESG+E K
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

8.56e-174

87.97

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSY+LNMSTDFIPMSVFSES               GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

7.84e-176

88.66

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSY+LNMSTDFIPMSVFSES         +S  +LGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

1.37e-193

95.53

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        RSYSLNMSTDFIPMSVFSESPP             GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

1.52e-169

86.6

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MD DDKPIDR SSRKL +N  S +  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        R+YSLNMSTDFIPMSVFSES               GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSE KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

5.31e-170

86.6

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MD DDKPIDR SSRKL +N+++V+GT  DFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF
        R+YSLNMSTDFIPMSVFSES               GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SF
Subjt:  RSYSLNMSTDFIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSF

Query:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        GAAEKKKVVSKGSE KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  GAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

SwissProt top hits

e value

%identity

Alignment

P41900 General transcription factor IIF subunit 2

9.2e-15

27.72

Show/hide

Query:  LETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL-RSYSLNMS-TDFIPMSVFSESPPAYLVDG
        L+ + A R +WL+K P+ + +    +P   +  V K+ ++  P Q        S   T  +   D    +   + L++S      + VFS   P+   DG
Subjt:  LETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL-RSYSLNMS-TDFIPMSVFSESPPAYLVDG

Query:  INSFSILG------KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKER
          + +         K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++
Subjt:  INSFSILG------KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKER

Query:  GELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
          +  ++F  FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  GELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

Q01750 General transcription factor IIF subunit 2

3.9e-13

26.64

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Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+  SV  ++   +      +
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS

Query:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
         S   K ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+           +KK+      + KR R ++  +  ++F 
Subjt:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
         FE+  Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q03123 General transcription factor IIF subunit 2

2.0e-14

29.94

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Query:  ILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLF
        ++ K  +EG ++++ + +P     + Y ++ R++  +S    RQ Q ++     + +P+       +    +KK   K  + KR R ++ ++  ++F  F
Subjt:  ILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLF

Query:  ERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        E+  Y+  K L+  T QP  Y+KEIL+D+ +YN KG H+ T+ELKPEY+    E KS
Subjt:  ERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q2T9L9 General transcription factor IIF subunit 2

6.6e-13

26.25

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Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+  SV  ++   +      +
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS

Query:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
         S   K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F 
Subjt:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
         FE+  Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E KS
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q8R0A0 General transcription factor IIF subunit 2

1.1e-12

26.64

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Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS
        K +  +WL+K P+ +++  +          A     V  L+   +   +   FT+  +LA   D G    S S      F+  SV  ++   +      +
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFIPMSVFSESPPAYLVDGINS

Query:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
         S   K ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F 
Subjt:  FSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
         FE+  Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

1.0e-61

49.07

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Query:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP  V +A             S D P   +AK++  VDPL+     D S  EF M + G + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES

Query:  PPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRL
                +N     G    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  + S  + EK+K    K +E KR 
Subjt:  PPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRL

Query:  RKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
        R++RGELE I+F+LFE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK+S ++
Subjt:  RKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

9.9e-73

55.09

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Query:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP
        LET  A+R+M L+K P  V  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS DFIPM+VF ES  
Subjt:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP

Query:  AYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKER
                     GK +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM + +  A EKKK+ ++ SE KR R++R
Subjt:  AYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKER

Query:  GELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
         E+E+++F LFERQ  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK++  E
Subjt:  GELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE

Sequences

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CDS sequence

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ATGGACGTCGACGACAAACCCATCGACCGTTGCAGTTCCAGAAAACTCCAAACCAATAACAACTCCGTCTCCGGAACCGGAACCGACTTCTTGGAGACCAACAAGGCCGA
CAGAGCAATGTGGCTCTTGAAATGCCCCCAGGCCGTTACTCGCGCCCTTTCTAATTCGCCGGATGGCCCTTCTCGTCCGGTCGCCAAGGTCATCGTCTCCGTCGACCCTC
TGCAATCCAATGACGACGACGATTCTTCATCTACTGAGTTCACTATGGAATTGGCTGGCACTGATTCTGGAAATTCATTAAGGTCCTACTCATTGAATATGTCGACAGAC
TTCATTCCAATGTCGGTATTTTCCGAGTCACCACCAGCATATCTGGTTGATGGAATCAATTCTTTTTCCATTTTAGGGAAGTTTACAGTTGAGGGGAAAATACTGAACAA
ATTTGACATGAAGCCCCATGATCAAAATCTTGAGAGGTATGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATG
TCACAGGAGGACATATGAGGCCTATGCCAGGGATGGATGTGACGTCTTTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAACAAAGAGGTTGAGAAAG
GAGCGTGGCGAATTGGAGAAGATTATTTTTAGGCTCTTTGAAAGACAACCATATTGGACGTCGAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAAGA
AATACTTAAAGACCTTTGTGTCTACAACAACAAAGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAGTCGGGTGATGAAACGAAATCGCGGTAG

mRNA sequence

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GTATAATCCAAATCTTTGCGAGTTTCGACCCAGCCTGAGCCTGAGGTTGGTTACGGAAAATGCCTTTCTAACAAATACCGTTTGTTTCATTCCTTTTCAATTTTCCCACC
TCCATAGACGCACCACCATTGCTCTCTTCTTCTTCTTCTTCGTCTTCATTCTTCGTCTTCTCCTCTCTCTCTCCACATTCTGCAATGGACGTCGACGACAAACCCATCGA
CCGTTGCAGTTCCAGAAAACTCCAAACCAATAACAACTCCGTCTCCGGAACCGGAACCGACTTCTTGGAGACCAACAAGGCCGACAGAGCAATGTGGCTCTTGAAATGCC
CCCAGGCCGTTACTCGCGCCCTTTCTAATTCGCCGGATGGCCCTTCTCGTCCGGTCGCCAAGGTCATCGTCTCCGTCGACCCTCTGCAATCCAATGACGACGACGATTCT
TCATCTACTGAGTTCACTATGGAATTGGCTGGCACTGATTCTGGAAATTCATTAAGGTCCTACTCATTGAATATGTCGACAGACTTCATTCCAATGTCGGTATTTTCCGA
GTCACCACCAGCATATCTGGTTGATGGAATCAATTCTTTTTCCATTTTAGGGAAGTTTACAGTTGAGGGGAAAATACTGAACAAATTTGACATGAAGCCCCATGATCAAA
ATCTTGAGAGGTATGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATG
CCAGGGATGGATGTGACGTCTTTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGCGAATTGGAGAAGATTAT
TTTTAGGCTCTTTGAAAGACAACCATATTGGACGTCGAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAAGAAATACTTAAAGACCTTTGTGTCTACA
ACAACAAAGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAGTCGGGTGATGAAACGAAATCGCGGTAGGTTTGTTCCAAGTACTGGGAAATGACTATG
GTACTGGCTAACCATTTAGTGCAAGGTGTGTCTGTGAAGGGAGAGGGCTCCTTTCTTTGCTTTTTAGTCTAGGCTTTGGATTTCCTCATTGTGCATCATCATCTCCAATT
TCTCGACTCATTAGTAACCACTGAAATTTTGTAGAAATGTGGAACCGTCATCGGTTTCCTTGCAACTGTATATTGTACATAGTGATCACGGTTGGTTGCTTGTGATCATA
TATCTGCTGTTCTGCTGTTACAAGTTCTTTTGTAATTTGTAAGTATTGATTGGATATGGCCTGAATTAAGGTTCTGTTGTTTGCAGGCTCTTGTATGCATTTCCTATCAT
ATTTTATTTATACTGTCT

Protein sequence

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MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTD
FIPMSVFSESPPAYLVDGINSFSILGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRK
ERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

MC04g1505 (gene) of Bitter gourd (Dali-11) v1 genome