CuGenDBv2

Gene ID	MC05g0170
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Genome location	MC05:1180387..1180997
RNA-Seq Expression	MC05g0170
Synteny	MC05g0170
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR007832 - RNA polymerase Rpc34 IPR016049 - RNA polymerase Rpc34-like IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK19400.1 DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]

6.28e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

XP_004148278.1 DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus]

5.48e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

XP_008439941.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]

2.15e-101

70.51

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK-GAIASVPCGVCPRI-----N
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+    KG+PK GA+AS+PCGVCPRI     N
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK-GAIASVPCGVCPRI-----N

Query:  GVVSPRTCVYYAKWLDF
        G++SP TCVYY KWLDF
Subjt:  GVVSPRTCVYYAKWLDF

XP_008448982.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo]

5.48e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

XP_038905079.1 DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]

3.86e-102

71.1

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQA+GL+K+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++KVIT+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+PVGKICYK C      KG+PK GA+ S+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYYAKWL+F
Subjt:  NGVVSPRTCVYYAKWLDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5W6 Uncharacterized protein

2.65e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

A0A1S3AZZ6 DNA-directed RNA polymerase III subunit RPC6-like

1.04e-101

70.51

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK-GAIASVPCGVCPRI-----N
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+    KG+PK GA+AS+PCGVCPRI     N
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGDPK-GAIASVPCGVCPRI-----N

Query:  GVVSPRTCVYYAKWLDF
        G++SP TCVYY KWLDF
Subjt:  GVVSPRTCVYYAKWLDF

A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like

2.65e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like

3.04e-102

70.64

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK+VQH+QN+GKK YLS DFE AK LTGG WYRDG+LD++YI TLK VC R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----
        MI ++K++T+EGIVE FK+SGA KVE    QIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C      KG+PK GA+AS+PCGVCPRI     
Subjt:  MISKRKVITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA-----KGDPK-GAIASVPCGVCPRI-----

Query:  NGVVSPRTCVYYAKWLDF
        NG++SP TCVYY KWLDF
Subjt:  NGVVSPRTCVYYAKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X1

2.12e-100

70.51

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Query:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R
        +L   EKVL+DLICSKQS GI   D+KRET   +S+VTKSLK+LQAKG+IKLV+H+QN+GKK YLSKDFE +K LTGG WY +GKLDREYI TLKG C R
Subjt:  SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVC-R

Query:  MISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKG----DPK-GAIASVPCGVCPRI-----N
        MI K KV T+EGIV+ FK+SGASKV    EQI+EIVN+LVLD+EVMEV+S+GSGEFDF+P+GKICYKC AKG    +PK GA+AS+PCGVCPRI     N
Subjt:  MISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKG----DPK-GAIASVPCGVCPRI-----N

Query:  GVVSPRTCVYYAKWLDF
        GV+SPRTCVYY KWLDF
Subjt:  GVVSPRTCVYYAKWLDF

SwissProt top hits

e value

%identity

Alignment

Q2T9S3 DNA-directed RNA polymerase III subunit RPC6

1.9e-19

28.19

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Query:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK
        +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+Y+  + +  +++TGG WY D   + E++E L   C    +
Subjt:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK

Query:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV
         K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+  +   P   +   PCG+
Subjt:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV

Query:  CPRIN-----GVVSPRTCVYYAKWLDF
        CP  +     G +SP  C+Y  +WL+F
Subjt:  CPRIN-----GVVSPRTCVYYAKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc6

1.9e-19

27.75

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Query:  QEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLK-GVCRMISK
        ++ +++ LI +  + G  T ++K  +   +  +TK LK+L+++ LIK V+  Q+  KK+Y+  + E ++ +TGG+ Y D   D +YI+ +K  +   +  
Subjt:  QEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLK-GVCRMISK

Query:  RKVITMEGIVEYFKR------SGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVCPRI-----NGVVSPRT
        +  + +  I+ Y ++      S +   E I+ +VN+++ D ++ E+R +  G       G I YK      P     ++PCG CP       NG+VSP+ 
Subjt:  RKVITMEGIVEYFKR------SGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVCPRI-----NGVVSPRT

Query:  CVYYAKWLD
        CVY+ ++L+
Subjt:  CVYYAKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC6

7.3e-19

28.19

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Query:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK
        +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+Y+  + +  +++TGG WY D   + E++E L   C    +
Subjt:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK

Query:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV
         K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+      P   +   PCG+
Subjt:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV

Query:  CP-----RINGVVSPRTCVYYAKWLDF
        CP        G +SP  C+Y  +WL+F
Subjt:  CP-----RINGVVSPRTCVYYAKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC6

5.6e-19

28.19

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Query:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK
        +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK V+      KK+Y+  + +  +++TGG WY D   + E++E L   C    +
Subjt:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK

Query:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV
         K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+      P   +   PCG+
Subjt:  RKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGV

Query:  CPRIN-----GVVSPRTCVYYAKWLDF
        CP  +     G +SP  C+Y  +WL+F
Subjt:  CPRIN-----GVVSPRTCVYYAKWLDF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC6

4.9e-15

26.22

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Query:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK
        ++EKV++ ++    + GI   D++ ++NL    + K LK+L+ K LIK V+      KK+Y+  + E   ++TGG WY+D   + E+++ L   C    +
Subjt:  SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISK

Query:  RK------------------VITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVC
         K                    T+  + ++    G SKV      +E I+ ++V D     VR            G   Y+      P   +  +PCG+C
Subjt:  RK------------------VITMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVC

Query:  PRIN-----GVVSPRTCVYYAKWLD
        P I      G V+  TC Y   WLD
Subjt:  PRIN-----GVVSPRTCVYYAKWLD

Arabidopsis top hits

e value

%identity

Alignment

AT5G23710.1 DNA binding;DNA-directed RNA polymerases

1.2e-45

45.71

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Query:  EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKR-
        EK L DLI   Q  G   F++KRE  +  ++VT+ + SL+ K LIK V +  N+G K YL+ +FE    LTGGEWY DG LD   IE LK  C MI +R 
Subjt:  EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKR-

Query:  --KVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAK----GDPK-GAIASVPCGVCPRI-----NGVVSPRT
          +V+T+E +  YF +     V+Q +EI+ +L+LD+ +MEV+S+G  EF    +G++CY+   K    G+P+ GA AS+PCGVCP I     +GV+SP T
Subjt:  --KVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAK----GDPK-GAIASVPCGVCPRI-----NGVVSPRT

Query:  CVYYAKWLDF
        CVY+ KWLDF
Subjt:  CVYYAKWLDF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AGCCTTACCTCGCAAGAAAAAGTGCTCCACGACCTAATTTGCAGCAAGCAGAGCGCGGGGATTTGTACATTCGACATGAAAAGAGAGACAAATTTGACCGAAAGCGTGGT
AACCAAATCGCTCAAGTCACTCCAAGCGAAAGGCCTAATAAAATTAGTCCAACACCATCAGAACAGAGGGAAGAAATTGTACCTGTCGAAAGATTTCGAAGCGGCAAAGG
CATTAACCGGCGGCGAATGGTACCGCGACGGGAAGCTGGATCGAGAATACATCGAAACTCTTAAAGGAGTGTGTAGAATGATTTCGAAGAGGAAGGTGATTACGATGGAA
GGAATTGTGGAGTATTTCAAGAGGAGTGGAGCTTCGAAAGTGGAGCAAATTGAAGAGATTGTGAATTCATTGGTGCTGGACCATGAAGTGATGGAGGTGAGGAGCAGTGG
ATCTGGAGAATTTGATTTTGTTCCTGTAGGGAAGATTTGTTACAAATGCTGTGCCAAAGGAGACCCAAAAGGAGCAATAGCTTCTGTTCCTTGTGGAGTCTGTCCACGGA
TTAACGGCGTCGTTTCGCCTCGGACTTGTGTCTACTACGCCAAGTGGCTAGATTTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

SLTSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLVQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDREYIETLKGVCRMISKRKVITME
GIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGDPKGAIASVPCGVCPRINGVVSPRTCVYYAKWLDF

MC05g0170 (gene) of Bitter gourd (Dali-11) v1 genome