; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g0520 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g0520
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationMC05:3957350..3960197
RNA-Seq ExpressionMC05g0520
SyntenyMC05g0520
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]1.45e-6691.23Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]2.93e-6691.23Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]1.01e-6490.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQ VA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR
XP_022137757.1 pre-rRNA-processing protein TSR2 homolog [Momordica charantia]2.41e-74100Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEEHLQGSR
Subjt:  QLMMIYEEHLQGSR
XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]9.83e-6589.47Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNLASDVF+WFS+SKPPLYVEDLE LLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein7.03e-6791.23Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X21.42e-6691.23Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X19.92e-6590.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQ VA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQ-VA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR
A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X21.42e-6691.23Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEEHLQGSR
A0A6J1C959 pre-rRNA-processing protein TSR2 homolog1.17e-74100Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEEHLQGSR
        QLMMIYEEHLQGSR
Subjt:  QLMMIYEEHLQGSR
SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR22.2e-0429.55Show/hide
Query:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEE
        +  +S V  +WD L +A++N WGG DS +K   +   V   F   K  +    +E  L  +++  F T +ED S   +A +++ IY +
Subjt:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEE
Q3KRG3 Pre-rRNA-processing protein TSR2 homolog3.4e-0530Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
        A+ +V   W  LQ+A+ N +GG  S QK+  +   +  +F+     L  +++E+ + E +   F+T ++DGS+ QVA+Q+  ++++  QG
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
Q3T090 Pre-rRNA-processing protein TSR2 homolog1.6e-0732.61Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E ++  F+T +EDGS+ QV++QL  ++    +G R
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR
Q8C8T8 Pre-rRNA-processing protein TSR2 homolog8.0e-0732.22Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++QL  ++    +G
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
Q969E8 Pre-rRNA-processing protein TSR2 homolog8.0e-0731.52Show/hide
Query:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
        +  + +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E L   F+T +EDGS+ QV++QL  ++    +G
Subjt:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQG
Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region4.2e-2763.54Show/hide
Query:  SGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS
        S LQ  I  + SRW GLQMA++NQWGG DS +KS  LA ++F   S+S   + VE++ENLLHESLLLSFNTEIEDGSIE+VAEQLM+++EEHL+G+
Subjt:  SGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS
AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region1.5e-1138.54Show/hide
Query:  LQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS
        L+  I  +  RW  ++ A++N WGGRDS  K+    + VF +F +SK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+   G+
Subjt:  LQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAA
ATGGCCATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTAC
GTGGAAGATCTGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATA
TACGAAGAACATTTGCAGGGAAGTCGCTAG
mRNA sequenceShow/hide mRNA sequence
GTTGCAGCAAACATATTGGACAGCACAACGTGGTTTCCAGAGTCTTTTGGATCAAGTTCAAACAGCTTCTCAGCGGCTAACTTTCCCAACTCTGGCTTCCCATGC
ATTCGACAAGCCCCTAACAGAGCGCCCCAGATTGAGATTGTTGGAGAGAATGGCATGTTCTTTATAAAATCATACGCACACTCCACCATTCCAGCACGCCCAAGC
AAGTCCACCAAGCTAGCGTAATGCTCTGGCCCTGGCTCTACATTGTACCTTGCTTTCATGGACTCAAAAATCTGCATCCCCCTCTTCAAATCTCCTGCTCTACTG
CAAGCTGATAATGCACAGACCAAACTCACGTAACTCGGTGCCATGCCTGCTGCCGATGTCATCTCCTCGAGCAATGCCACGGCCTTGTCTGCGTGTCCTTGGTGT
GCATATCCGCCCAACAGTGTATTCCAAGACACCAAATTTTTGTCTGGCATCTCCTTGAAGGCTCGCTCTGCTTCATCAATGCTTCCACATTTTCCATACATGTCA
ACCAGTGCACTCCCAACAAAGATGTTCTCCTCTACACAAGCCTTGACCGCTAGCGCTTGAACTGACCTCCCCAACTCGATTCCTGAAAGGCCAGCACAGGCACAA
AGCACACTCGATACCATAAAATCAATTGGTTTGATGTCTTCTTTCCTCGCTTGCAAGAATAAGCAGCAAGCCTTCTCTTCCTCGTTGTTTTGAATGTAAGCAGCT
ATCAGAGAGGACCACGAGACGGCATTCCGCTCTCCCATTCTGTCGAAAACCATCCCGGAACATTCGACCTCCCCACATTTCCCATAAAAATCAATCAACCCATTT
GAAACAGAGACATTCTGCTCAAAACCACTTCGAATTATGAATCCATGTAGCTGACATCCAGGCTCCAAGCCCAGTTTGTCTGAACAAGCATTGAGAAAAGCACAG
AATGTTATGGAATCAGGGCTCCCACCAGCACGAAGTAGCTCAAGAAATGCAATGACGGAATCTTCAGGCCGCCCATGGTGCACGGAATTGGATATATACGCATTC
CACGTTTCGAGGTTTCGGTGAGGCATTTCAACAAACACCTTGGATGCGTCCTCGAGAAGACCCAGTTTACTGTACATGTCGAAGGTGCTGCACCCAACGAAGACA
TCGTTTATTAGTCCCTCCTTAACCGCAAGTGCGTGTATCTGTTTGCCCGACATGGCCATGCGAAGGGAAGTGGAAGCTTTGAGAGCGCAAGGGAAGGTGAAATCA
TTGGGGCGAACACAGTCGCTTAGCATGTGGGAGAAGTAAAGTAGAGCAGAAGAAAAATGGCCGTTTTGGACGGAGCCGGCGATGAGGGCGGTCCAAGTGACGACG
GACCGGCAAGGGGCGAGTCCGAGGACGAGTTCGGCTGAGTCAGGATGATCGAGTTTGGCGTACATATTCACAAGGTGGTTGTAGAGGAAGGAAGGAAGAGGGGTT
TGCAAGGTTTTGAGAATCTGGGCGTGGGCTGCTCGGCCGAGAAGCGAAGAACGAGCCGATACGGCCAATTCGACGAGTGAAGCGAGCGAGTTTGGCGAGAGAAAT
GGCATGGTTGGCTACTGCCGAAGATCATGATCTGTATTGATTAGAATTGATGAAGCAGAAAAAAGAAGAAGAGAGAGCAATTTTGCCATCGTTTCATGTTCGATT
GGAGAATCTTCCTCTATGAAGCTACTCCGATTCAGTTGGATTTGGCGGGAATTCCAGAAGCCATAGAACTGAGCTCCATTATTTGAAGATTTATAAAGAGGAGAG
AGAAAACTAAGATTTCGAGGGTCTGGAGGACGGAGAAGACGAAGACGAAGCTCAGAGGTTCATCCATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGG
CCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGCCATTCAAAACCAATGGGGCGGTCGCGACTCTCACC
AGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAGAGCTTGTTAC
TCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATATACGAAGAACATTTGCAGGGAAGTCGCTAGAAAATAGAAT
CAATGTTCATAAGAAAAAACATCGGCATCGCATTGCCAAGGGCTTGAAGGCTGGTAGAATTCAGAAATGTTATGGGAATTCTTATGATTAAGTTCAAAATTCAAA
CACTGTAAATGGAATATTCATTCATCATCCTCCATGTTTTAAATATTTTGATAAAAAAAAAAAAAGAGTTTTGAAGAGGGTGATAAAATATAGGTTAGATTATAT
TATTATTTTTAATACCACAAATTGGGATATGGGTTCTAACTTTTGGGGAGGAGTAGGTGTTAGTTATAGTTGAGTTATTTTTTTTATCACTTTCGTAATATATTT
TAGATTAAATATA
Protein sequenceShow/hide protein sequence
MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMI
YEEHLQGSR