CuGenDBv2

Gene ID	MC05g0793
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	MC05:6672331..6672504
RNA-Seq Expression	MC05g0793
Synteny	MC05g0793
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009536 - plastid (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007641 - RNA polymerase Rpb2, domain 7 IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

BBN70082.1 hypothetical protein Prudu_1405S000400 [Prunus dulcis]

2.76e-27

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

NLZ73073.1 DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium]

5.36e-27

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

VVW90363.1 unnamed protein product, partial [Nymphaea colorata]

3.19e-26

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

VVW90808.1 unnamed protein product, partial [Nymphaea colorata]

1.73e-26

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

WP_199287517.1 hypothetical protein, partial [Photobacterium chitinilyticum]

2.21e-26

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGR+KQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

TrEMBL top hits

e value

%identity

Alignment

A0A444JHR1 DNA-directed RNA polymerase (Fragment)

1.07e-26

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGR+KQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

A0A5H2XTM0 DNA-directed RNA polymerase

1.34e-27

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

A0A5K1HR94 DNA-directed RNA polymerase (Fragment)

1.54e-26

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

A0A5K1HTK9 DNA-directed RNA polymerase (Fragment)

8.38e-27

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

A0A7X8ZSZ9 DNA-directed RNA polymerase subunit beta

2.59e-27

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTI+
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

SwissProt top hits

e value

%identity

Alignment

A9LYH7 DNA-directed RNA polymerase subunit beta

2.0e-22

86.21

Show/hide

Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Q3V542 DNA-directed RNA polymerase subunit beta

2.0e-22

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Q589C0 DNA-directed RNA polymerase subunit beta

1.5e-22

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHI+ARQD+L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Q5QA72 DNA-directed RNA polymerase subunit beta

2.0e-22

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Q8S8X9 DNA-directed RNA polymerase subunit beta

2.0e-22

86.21

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGRAKQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

3.2e-23

84.48

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Query:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII
        L+   PLRGR+KQGGQRVGE+EVWALEGFGVAHILQEMLTYKSDHIRARQ++L TTII
Subjt:  LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

Sequences

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CDS sequence

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TTGTTACACACAACACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATAGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTGCAAGA
GATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGATATACTTGATACTACGATCATC

mRNA sequence

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TTGTTACACACAACACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATAGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTGCAAGA
GATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGATATACTTGATACTACGATCATC

Protein sequence

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LLHTTPLRGRAKQGGQRVGEIEVWALEGFGVAHILQEMLTYKSDHIRARQDILDTTII

MC05g0793 (gene) of Bitter gourd (Dali-11) v1 genome