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MC05g0795 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g0795
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationMC05:6692243..6692409
RNA-Seq ExpressionMC05g0795
SyntenyMC05g0795
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN70082.1 hypothetical protein Prudu_1405S000400 [Prunus dulcis]1.06e-1670.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
NLZ73073.1 DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium]1.98e-1668.97Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
PHT86502.1 hypothetical protein T459_08608 [Capsicum annuum]5.09e-1667.24Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQ+V EIEVWALE F++AHIL   L YKSDHI+A Q++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
VVW90808.1 unnamed protein product, partial [Nymphaea colorata]5.38e-1668.97Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
WP_199287517.1 hypothetical protein, partial [Photobacterium chitinilyticum]5.21e-1670.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
TrEMBL top hitse value%identityAlignment
A0A2G2ZWY2 DNA-directed RNA polymerase2.46e-1667.24Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQ+V EIEVWALE F++AHIL   L YKSDHI+A Q++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
A0A444JHR1 DNA-directed RNA polymerase (Fragment)2.52e-1670.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
A0A5H2XTM0 DNA-directed RNA polymerase5.11e-1770.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
A0A5K1HTK9 DNA-directed RNA polymerase (Fragment)2.60e-1668.97Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
A0A7X8ZSZ9 DNA-directed RNA polymerase subunit beta9.56e-1768.97Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
SwissProt top hitse value%identityAlignment
A9LYH7 DNA-directed RNA polymerase subunit beta1.9e-1470.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
P11703 DNA-directed RNA polymerase subunit beta8.6e-1572.41Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHIKARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
Q3V542 DNA-directed RNA polymerase subunit beta1.9e-1470.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
Q589C0 DNA-directed RNA polymerase subunit beta1.5e-1472.41Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHIKARQ +L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
Q5QA72 DNA-directed RNA polymerase subunit beta1.9e-1470.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta2.3e-1570.69Show/hide
Query:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII
        L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Subjt:  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTTACACACAACACCCCTTAGAGGAAGGGTCAAGCAAGGTGGACAACGGGTGAGAGAAATAGAGGTTTGGGCTCTAGAAGAATTTGATGTTGCTCATATTTTGTTACT
TTATAAATCTGATCATATTAAAGCTCGACAAAAAATACTTGATACTACGATCATT
mRNA sequenceShow/hide mRNA sequence
TTGTTACACACAACACCCCTTAGAGGAAGGGTCAAGCAAGGTGGACAACGGGTGAGAGAAATAGAGGTTTGGGCTCTAGAAGAATTTGATGTTGCTCATATTTTGTTACT
TTATAAATCTGATCATATTAAAGCTCGACAAAAAATACTTGATACTACGATCATT
Protein sequenceShow/hide protein sequence
LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHILLLYKSDHIKARQKILDTTII