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MC05g0852 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g0852
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description40S ribosomal protein S23-like
Genome locationMC05:7475803..7476099
RNA-Seq ExpressionMC05g0852
SyntenyMC05g0852
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACF83276.1 unknown [Zea mays]7.77e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

GER49127.1 40S ribosomal protein S23 [Striga asiatica]7.77e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

KAF7805552.1 40S ribosomal protein S23 [Senna tora]7.77e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

KCW49709.1 hypothetical protein EUGRSUZ_K03211 [Eucalyptus grandis]4.28e-4579.44Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV------LLALFKE
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I K   IAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV      LLALFKE
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV------LLALFKE

Query:  KKEKLRS
        KKEK RS
Subjt:  KKEKLRS

XP_022145774.1 40S ribosomal protein S23-like [Momordica charantia]9.42e-4976.72Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPNEIYGCLNQIEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

TrEMBL top hitse value%identityAlignment
A0A059A7J6 Uncharacterized protein2.07e-4579.44Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV------LLALFKE
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I K   IAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV      LLALFKE
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV------LLALFKE

Query:  KKEKLRS
        KKEK RS
Subjt:  KKEKLRS

A0A072VW19 40S ribosomal protein S23-13.76e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A151TV24 40S ribosomal protein S233.76e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A6A6L6X2 Uncharacterized protein3.76e-4473.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A6J1CW97 40S ribosomal protein S23-like4.56e-4976.72Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPNEIYGCLNQIEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S232.1e-3573.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

P49201 40S ribosomal protein S23-22.1e-3573.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Q86FP7 40S ribosomal protein S238.4e-2961.54Show/hide
Query:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV---
        K+HLG   K  PF G+SHAKGIVLEK+G+EAKQ N  I            +KI AFVP +  GCLN IEENDEVL+AGFGR+GHAVGDIP V FKVV   
Subjt:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV---

Query:  ---LLALFKEKKEKLRS
           LLAL+KEKKE+ RS
Subjt:  ---LLALFKEKKEKLRS

Q9M5Z9 40S ribosomal protein S232.1e-3573.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Q9SF35 40S ribosomal protein S23-17.3e-3370.69Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein5.2e-3470.69Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

AT5G02960.1 Ribosomal protein S12/S23 family protein1.5e-3673.28Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGR+GHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATGATGGTAT
TGAAAAAATTGCCGCATTTGTGCCTAATGAGATATATGGTTGTCTTAACCAAATTGAGGAGAATGATGAAGTATTGATTGCCGGATTCGGTCGTGAAGGACATGCCGTCG
GAGACATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCTAAGGTCT
mRNA sequenceShow/hide mRNA sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATGATGGTAT
TGAAAAAATTGCCGCATTTGTGCCTAATGAGATATATGGTTGTCTTAACCAAATTGAGGAGAATGATGAAGTATTGATTGCCGGATTCGGTCGTGAAGGACATGCCGTCG
GAGACATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCTAAGGTCT
Protein sequenceShow/hide protein sequence
KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIEKIAAFVPNEIYGCLNQIEENDEVLIAGFGREGHAVGDIPDVGFKVVLLALFKEKKEKLRS