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MC05g0966 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g0966
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionGag/pol protein
Genome locationMC05:10528512..10528952
RNA-Seq ExpressionMC05g0966
SyntenyMC05g0966
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19580.1 gag/pol protein [Cucumis melo var. makuwa]5.86e-4353.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+N++TILVV  LKF+ TEEC   +   A+R     YD+WIKAN+KA+VY+LA+++D L KKH S+ T  EI+ S+  M GQP   L HEA K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE I  REH+L++M HFN+ E+NG  ID+ +Q+SFILESL +SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.21e-4755.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVVASRMVC--NTYDKWIKANDKAQVYMLATLNDTLAKKHE-SMNTYEIIQSIHDMSGQPFEKLHHEALKFV
        NY +WK+N++TILV++ L+F+  E+C    V++  V   N YD+WIK+NDKA+VY+LA+++D LAKKHE ++ T EI+ S+  M GQP  +  HEALKFV
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVVASRMVC--NTYDKWIKANDKAQVYMLATLNDTLAKKHE-SMNTYEIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        YN++MKE    REH+LNLM HFNV E NG+VID+ SQ SFILESL ++F+
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]3.97e-4251.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY+ WK+N++TILVV+ L+F+ TEEC       A+R V   YD+W+KAN+KA++Y+LA+++D LAKKHES+ T  EII S+ ++ GQP   L HEA+K +
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE    REH+L++M +FN+ E NG  ID+ +Q SFIL+SL +SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

XP_038885834.1 uncharacterized protein LOC120076130 [Benincasa hispida]2.72e-4452Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTYE-IIQSIHDMSGQPFEKLHHEALKFV
        NY  WKTN++TILV++ L+FI TEEC  +    A+R V + Y++WI+ NDK   Y+LA ++D LAKKHESM T + I++ +  M GQP   L H+++K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTYE-IIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        YN  MKE    REH+LN+M HFNV E+N VV+D+ SQI FILESL +SF+
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

XP_038904195.1 uncharacterized protein LOC120090541 [Benincasa hispida]6.79e-4451.68Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+NI+TILV++ L+F+ TEEC       A+R V + YD W+KAN+KAQVY+LA++ D L+KKHE + T  EII S+  + GQP     H+A+KFV
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKE-IIGREHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSF
        YN +MKE    REH+LN+M HFN+ E+NGVV+++ S++ FI++SLS++F
Subjt:  YNTKMKE-IIGREHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSF

TrEMBL top hitse value%identityAlignment
A0A5A7UCD3 Gag/pol protein2.82e-4251.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVVAS--RMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+N++TILVV+ L+FI TEEC   + ++  R    TYD+WIK N+K  VY+L++++D L KKHES+ T  EI+ S+  M GQP   L HEA+K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVVAS--RMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE    REH+L++M HFN+ E+NG  ID+ +Q+SFILE LS+SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

A0A5A7UH70 Gag/pol protein2.13e-4252.67Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+N++TILVV+ L+FI T+EC    V  A+R     YD+WIKAN+K  VY+LA+++D LAKK+ES+ T  EII S+  M GQP   L HEA+K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE    REH+L++M HFN+ E+NG  ID+ +Q++FILESL +SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

A0A5D3BPM3 Gag/pol protein2.88e-4253.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESM-NTYEIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+N++TILVV+ L+F+ TEEC       A+R     YD+WIKAN K  VY+LA+++D LAKKHES+  T EI+ S+  M GQP   L HEA+K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVV--ASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESM-NTYEIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE    REH+L++M HFN+ E+NG VID+  Q+SFILESL +SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

A0A5D3D7Z1 Gag/pol protein2.84e-4353.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV
        NY  WK+N++TILVV  LKF+ TEEC   +   A+R     YD+WIKAN+KA+VY+LA+++D L KKH S+ T  EI+ S+  M GQP   L HEA K++
Subjt:  NYTKWKTNISTILVVEVLKFITTEEC--LAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTY-EIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        Y  +MKE I  REH+L++M HFN+ E+NG  ID+ +Q+SFILESL +SFI
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

A0A6J1DWL0 uncharacterized protein LOC1110247341.07e-4755.33Show/hide
Query:  NYTKWKTNISTILVVEVLKFITTEECLAKVVASRMVC--NTYDKWIKANDKAQVYMLATLNDTLAKKHE-SMNTYEIIQSIHDMSGQPFEKLHHEALKFV
        NY +WK+N++TILV++ L+F+  E+C    V++  V   N YD+WIK+NDKA+VY+LA+++D LAKKHE ++ T EI+ S+  M GQP  +  HEALKFV
Subjt:  NYTKWKTNISTILVVEVLKFITTEECLAKVVASRMVC--NTYDKWIKANDKAQVYMLATLNDTLAKKHE-SMNTYEIIQSIHDMSGQPFEKLHHEALKFV

Query:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI
        YN++MKE    REH+LNLM HFNV E NG+VID+ SQ SFILESL ++F+
Subjt:  YNTKMKEIIG-REHILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATTATACTAAATGGAAAACAAATATTAGTACTATCTTGGTTGTTGAGGTTCTCAAATTTATCACAACGGAGGAATGTCTCGCAAAAGTTGTTGCATCTCGAATGGTTTG
TAATACATATGACAAATGGATTAAAGCTAATGACAAAGCTCAGGTTTACATGTTGGCTACTTTGAATGATACTCTAGCCAAGAAACATGAATCGATGAACACATATGAGA
TAATACAGTCGATCCATGATATGTCTGGACAACCTTTTGAAAAATTACACCACGAGGCATTGAAGTTTGTATACAATACTAAAATGAAAGAGATCATCGGAAGGGAGCAT
ATCCTTAACTTAATGGCCCATTTCAATGTGACGGAAATCAATGGAGTTGTCATTGATAAAAATAGTCAAATTAGTTTTATCTTGGAATCACTTTCTAGGAGTTTTATT
mRNA sequenceShow/hide mRNA sequence
AATTATACTAAATGGAAAACAAATATTAGTACTATCTTGGTTGTTGAGGTTCTCAAATTTATCACAACGGAGGAATGTCTCGCAAAAGTTGTTGCATCTCGAATGGTTTG
TAATACATATGACAAATGGATTAAAGCTAATGACAAAGCTCAGGTTTACATGTTGGCTACTTTGAATGATACTCTAGCCAAGAAACATGAATCGATGAACACATATGAGA
TAATACAGTCGATCCATGATATGTCTGGACAACCTTTTGAAAAATTACACCACGAGGCATTGAAGTTTGTATACAATACTAAAATGAAAGAGATCATCGGAAGGGAGCAT
ATCCTTAACTTAATGGCCCATTTCAATGTGACGGAAATCAATGGAGTTGTCATTGATAAAAATAGTCAAATTAGTTTTATCTTGGAATCACTTTCTAGGAGTTTTATT
Protein sequenceShow/hide protein sequence
NYTKWKTNISTILVVEVLKFITTEECLAKVVASRMVCNTYDKWIKANDKAQVYMLATLNDTLAKKHESMNTYEIIQSIHDMSGQPFEKLHHEALKFVYNTKMKEIIGREH
ILNLMAHFNVTEINGVVIDKNSQISFILESLSRSFI