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MC05g0979 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g0979
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiondouble-stranded RNA-binding protein 4-like isoform X3
Genome locationMC05:10851110..10851359
RNA-Seq ExpressionMC05g0979
SyntenyMC05g0979
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsIPR011907 - Ribonuclease III
IPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017947.1 Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperma]1.20e-2666.25Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLH
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLH
XP_022935533.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]2.26e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
XP_022984141.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima]2.47e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
XP_022984142.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima]2.18e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
XP_022984143.1 double-stranded RNA-binding protein 4-like isoform X3 [Cucurbita maxima]2.12e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
TrEMBL top hitse value%identityAlignment
A0A6J1F5U3 double-stranded RNA-binding protein 4-like isoform X11.24e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
A0A6J1FAT0 double-stranded RNA-binding protein 4-like isoform X21.10e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
A0A6J1J1D4 double-stranded RNA-binding protein 4-like isoform X21.05e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
A0A6J1J4E3 double-stranded RNA-binding protein 4-like isoform X11.20e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
A0A6J1J9P9 double-stranded RNA-binding protein 4-like isoform X31.03e-2563.86Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
        YK+ L+EY  K+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRRA +QDAARIALEYIS++ K DGF+LLH ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRA-DQDAARIALEYISQRTKHDGFLLLHREV
SwissProt top hitse value%identityAlignment
O04492 Double-stranded RNA-binding protein 11.7e-0637.5Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
        +KS L EYA K  +P PVY+   +G SH   ++S V ++ VR+ S P  F  + A+Q AA +AL  +++ ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
Q5N8Z0 Double-stranded RNA-binding protein 14.1e-0540.58Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQ
        YKS+L  YA K    LP YQT  +G  H  +++SVV V+   F SP  F   + A+  AA++AL  + Q
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQ
Arabidopsis top hitse value%identityAlignment
AT1G09700.1 dsRNA-binding domain-like superfamily protein1.2e-0737.5Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
        +KS L EYA K  +P PVY+   +G SH   ++S V ++ VR+ S P  F  + A+Q AA +AL  +++ ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
AT3G62800.1 double-stranded-RNA-binding protein 41.2e-0433.8Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT
        YK +L  YAL+  + LPVY    +G  H P++R  V      F S   FP  + A+  AA+IA+  ++ ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT
AT3G62800.2 double-stranded-RNA-binding protein 41.2e-0433.8Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT
        YK +L  YAL+  + LPVY    +G  H P++R  V      F S   FP  + A+  AA+IA+  ++ ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT
AT3G62800.3 double-stranded-RNA-binding protein 41.2e-0433.8Show/hide
Query:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT
        YK +L  YAL+  + LPVY    +G  H P++R  V      F S   FP  + A+  AA+IA+  ++ ++
Subjt:  YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACAAGAGCGAATTGAATGAATATGCTCTAAAAGCAATCATTCCATTACCAGTTTATCAGACATTTAATAAAGGATCTTCACACCTACCAAAGTATAGGTCAGTTGTGAA
TGTCAATAGGGTACGTTTCACGTCTCCAAATACGTTTCCTAATCGAAGGGCTGATCAGGATGCTGCAAGAATTGCCCTTGAGTACATATCACAAAGAACAAAGCACGATG
GCTTTCTTCTTCTTCATCGGGAGGTA
mRNA sequenceShow/hide mRNA sequence
TACAAGAGCGAATTGAATGAATATGCTCTAAAAGCAATCATTCCATTACCAGTTTATCAGACATTTAATAAAGGATCTTCACACCTACCAAAGTATAGGTCAGTTGTGAA
TGTCAATAGGGTACGTTTCACGTCTCCAAATACGTTTCCTAATCGAAGGGCTGATCAGGATGCTGCAAGAATTGCCCTTGAGTACATATCACAAAGAACAAAGCACGATG
GCTTTCTTCTTCTTCATCGGGAGGTA
Protein sequenceShow/hide protein sequence
YKSELNEYALKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRADQDAARIALEYISQRTKHDGFLLLHREV