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MC05g1018 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1018
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationMC05:13736148..13736570
RNA-Seq ExpressionMC05g1018
SyntenyMC05g1018
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]6.44e-3455.63Show/hide
Query:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L  ++     +DDF  S +ES E++L R++ MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]2.24e-3255.56Show/hide
Query:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID--VGEMNLEKN---REGDDDEE
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID--VGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
          L  ++     +DDFL S YES E++L R++ MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.50e-90100Show/hide
Query:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV
        EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV
Subjt:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]5.94e-2452.38Show/hide
Query:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMREML
         MEDS+D FL   YES E + MR+M+
Subjt:  TMEDSNDDFLESPYESFEEMLMREML

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]3.05e-2450.39Show/hide
Query:  MDRNLIVSEMEPMKKETR-KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--
        M+ +L+  ++E  +KE R KRK   +KNQPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA +FP       AS++  E N+ K ++ DDD++  L +  
Subjt:  MDRNLIVSEMEPMKKETR-KRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--

Query:  -ATTMEDSNDDFLESPYESFEEMLMREML
         A  MEDS+DDFL   YES E + MR+M+
Subjt:  -ATTMEDSNDDFLESPYESFEEMLMREML

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein1.08e-3255.56Show/hide
Query:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID--VGEMNLEKN---REGDDDEE
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID--VGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
          L  ++     +DDFL S YES E++L R++ MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A1S3B8H6 uncharacterized protein LOC1034871673.12e-3455.63Show/hide
Query:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L  ++     +DDF  S +ES E++L R++ MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A5D3DPQ4 Sigma factor binding protein 23.12e-3455.63Show/hide
Query:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEMEPM----KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L  ++     +DDF  S +ES E++L R++ MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.21e-90100Show/hide
Query:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV
        EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV
Subjt:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLV

A0A6J1FKR4 uncharacterized protein LOC1114466392.88e-2452.38Show/hide
Query:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMREML
         MEDS+D FL   YES E + MR+M+
Subjt:  TMEDSNDDFLESPYESFEEMLMREML

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.2e-0743.04Show/hide
Query:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        S   P +   ++++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.8e-0850.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein8.3e-0943.04Show/hide
Query:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        S   P +   ++++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

AT3G56710.1 sigma factor binding protein 11.3e-0950.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGCCGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCCTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGATGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTC
mRNA sequenceShow/hide mRNA sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGCCGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCCTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGATGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTC
Protein sequenceShow/hide protein sequence
MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTMEDSNDDFLES
PYESFEEMLMREMLMENFAVPSRSVESSGLV