; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g1037 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1037
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationMC05:14053043..14053408
RNA-Seq ExpressionMC05g1037
SyntenyMC05g1037
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.96e-1637.9Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVA
        ++PNWC +CN S E ++HLF+H P+   LW     S   +L+  +   T   Q +  +  + NI      + +NT   I W IWLERNNR F    +   
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVA

Query:  SLWEDIIIHISSWFSKSNLFCNYD
         LWED +  I  W  KS LF NYD
Subjt:  SLWEDIIIHISSWFSKSNLFCNYD

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.23e-1636.89Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL
        ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +    +   + ++ +NT+  + W IWLERNNR F    +    L
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL

Query:  WEDIIIHISSWFSKSNLFCNYD
        WEDI+     W  KS LF NYD
Subjt:  WEDIIIHISSWFSKSNLFCNYD

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.22e-1636.89Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL
        ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +    +   + ++ +NT+  + W IWLERNNR F    +    L
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL

Query:  WEDIIIHISSWFSKSNLFCNYD
        WEDI+     W  KS LF NYD
Subjt:  WEDIIIHISSWFSKSNLFCNYD

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.81e-1539.02Show/hide
Query:  INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVA
        + PNWCVLC   SE   HLFLH   +  LW  L      SL F    D F++   F   + +++ ++      M AI W IW ERNNR F  +S  +++A
Subjt:  INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVA

Query:  SLWEDIIIHISSWFSKSNLFCNY
        +LWED  I I +W+S+   F NY
Subjt:  SLWEDIIIHISSWFSKSNLFCNY

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.29e-1534.75Show/hide
Query:  PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWED
        P+WCV+C  + E   HLF+  PF  S+W  +      ++   +C+   +   S   +     +N++ +NT  +  WNIWLERN R F+   +T A +WED
Subjt:  PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWED

Query:  IIIHISSWFSKSNLFCNY
        I      W S+S+LF NY
Subjt:  IIIHISSWFSKSNLFCNY

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.85e-1637.9Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVA
        ++PNWC +CN S E ++HLF+H P+   LW     S   +L+  +   T   Q +  +  + NI      + +NT   I W IWLERNNR F    +   
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVA

Query:  SLWEDIIIHISSWFSKSNLFCNYD
         LWED +  I  W  KS LF NYD
Subjt:  SLWEDIIIHISSWFSKSNLFCNYD

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.94e-1736.89Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL
        ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +    +   + ++ +NT+  + W IWLERNNR F    +    L
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL

Query:  WEDIIIHISSWFSKSNLFCNYD
        WEDI+     W  KS LF NYD
Subjt:  WEDIIIHISSWFSKSNLFCNYD

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.90e-1736.89Show/hide
Query:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL
        ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +    +   + ++ +NT+  + W IWLERNNR F    +    L
Subjt:  INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPSPVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASL

Query:  WEDIIIHISSWFSKSNLFCNYD
        WEDI+     W  KS LF NYD
Subjt:  WEDIIIHISSWFSKSNLFCNYD

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.36e-1539.02Show/hide
Query:  INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVA
        + PNWCVLC   SE   HLFLH   +  LW  L      SL F    D F++   F   + +++ ++      M AI W IW ERNNR F  +S  +++A
Subjt:  INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVA

Query:  SLWEDIIIHISSWFSKSNLFCNY
        +LWED  I I +W+S+   F NY
Subjt:  SLWEDIIIHISSWFSKSNLFCNY

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein1.59e-1534.75Show/hide
Query:  PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWED
        P+WCV+C  + E   HLF+  PF  S+W  +      ++   +C+   +   S   +     +N++ +NT  +  WNIWLERN R F+   +T A +WED
Subjt:  PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWED

Query:  IIIHISSWFSKSNLFCNY
        I      W S+S+LF NY
Subjt:  IIIHISSWFSKSNLFCNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATTAATCCAAACTGGTGTGTTTTATGCAATTGCTCTAGTGAAATGGATCATCTATTTTTGCATCACCCCTTTTTGGCATCTCTTTGGCATTGTTTGGTGTACAG
TTTCCAAATTTCACTTGTCTTTCCCCATTGTATTGACACTTTCAAATCACAGGGTGTATTTCCAAGTCCAGTAACTCGAAATATTTTGCGGTATAATACTATGAGAGCTA
TTCATTGGAACATTTGGTTGGAACGAAACAACCGCACTTTCTCGGACATCTCAAGGACAGTTGCTTCGCTTTGGGAGGACATCATCATACATATTTCGTCATGGTTTTCC
AAATCCAATCTCTTTTGTAATTATGAT
mRNA sequenceShow/hide mRNA sequence
ATGCATATTAATCCAAACTGGTGTGTTTTATGCAATTGCTCTAGTGAAATGGATCATCTATTTTTGCATCACCCCTTTTTGGCATCTCTTTGGCATTGTTTGGTGTACAG
TTTCCAAATTTCACTTGTCTTTCCCCATTGTATTGACACTTTCAAATCACAGGGTGTATTTCCAAGTCCAGTAACTCGAAATATTTTGCGGTATAATACTATGAGAGCTA
TTCATTGGAACATTTGGTTGGAACGAAACAACCGCACTTTCTCGGACATCTCAAGGACAGTTGCTTCGCTTTGGGAGGACATCATCATACATATTTCGTCATGGTTTTCC
AAATCCAATCTCTTTTGTAATTATGAT
Protein sequenceShow/hide protein sequence
MHINPNWCVLCNCSSEMDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFS
KSNLFCNYD