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MC05g1079 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1079
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationMC05:14658504..14658778
RNA-Seq ExpressionMC05g1079
SyntenyMC05g1079
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV81051.1 DNA_pol_A_exo1 domain-containing protein [Cephalotus follicularis]1.75e-0837.23Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQTL---SLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L+ FL N+  TFVG+ + ++ EKL+   GL + N +DL++LD    L    L+ LA N LG+D   P+ +  SRW  + L+  QV + + D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQTL---SLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

PQP94849.1 Werner Syndrome-like exonuclease [Prunus yedoensis var. nudiflora]1.90e-0734.69Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLD-------RGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L +FL N S TFVG+ ++++  KL    GL + N++DL+ L+       R +++SL+ +A   LG ++H P+ +  S W K  LS  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLD-------RGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

XP_010111221.1 Werner Syndrome-like exonuclease [Morus notabilis]1.01e-0735.71Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L++FL ++  TFVG+ +E + EKL+   GL + N +DL+ L R +        + LR LA   LG ++  P+++  SRW K  LS  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

XP_016184712.1 Werner Syndrome-like exonuclease [Arachis ipaensis]1.28e-0734.69Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLDRG-------QTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L++FL NE +TF+G+ +E++ EKL +   L + N +DL+DL          +   L+ LA   LGL+   P+R+ +SRW    L+  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLDRG-------QTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

XP_027353232.1 Werner Syndrome-like exonuclease [Abrus precatorius]1.22e-0732.65Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDL-------DRGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L++FL++ ++TFVG+ +E++ +KL +F  LG+ N +DL+ L          +   LR L L  LGL+    +++ +S+W   RL+  QV + + D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDL-------DRGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

TrEMBL top hitse value%identityAlignment
A0A1Q3CLT3 DNA_pol_A_exo1 domain-containing protein8.47e-0937.23Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQTL---SLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L+ FL N+  TFVG+ + ++ EKL+   GL + N +DL++LD    L    L+ LA N LG+D   P+ +  SRW  + L+  QV + + D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQTL---SLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

A0A314XQK4 Werner Syndrome-like exonuclease9.22e-0834.69Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLD-------RGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L +FL N S TFVG+ ++++  KL    GL + N++DL+ L+       R +++SL+ +A   LG ++H P+ +  S W K  LS  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLD-------RGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

A0A396H3Q6 Putative DNA helicase2.94e-0736.08Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDL------DRGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L+ FL NE NTFVG+ +E++  KL +   L + N ++L++L      +  +   L+ LAL+ LG D   PR++  SRW+  RL+  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDL------DRGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

A0A6A1WBZ0 Werner Syndrome-like exonuclease1.79e-0737.76Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L+ FL + S TFVG+ +E + EKL     L + N +DL+DL   +          L+ LA   LG D   PRR+  SRW  +RLS  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKL-QFLGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

W9SHU8 Werner Syndrome-like exonuclease4.91e-0835.71Show/hide
Query:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI
        L++FL ++  TFVG+ +E + EKL+   GL + N +DL+ L R +        + LR LA   LG ++  P+++  SRW K  LS  QV +   D F+
Subjt:  LLNFLTNESNTFVGLNLEKNSEKLQF-LGLGLHNTIDLKDLDRGQ-------TLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCTCAACTTCCTGACAAATGAGTCCAACACTTTTGTTGGACTTAACCTCGAGAAGAACTCGGAGAAGCTGCAGTTTTTGGGGTTGGGGCTCCATAACACCATTGATCT
GAAGGATTTGGATCGCGGGCAGACACTATCCCTGAGGCTTCTGGCTCTTAACTTTCTTGGATTGGATTACCATCCTCCAAGAAGATTGAAAAAGAGCCGGTGGTCTAAAG
ATCGCCTCTCAGAGTTACAGGTGGGACACACAACCTCAGATGTTTTTATC
mRNA sequenceShow/hide mRNA sequence
CTCCTCAACTTCCTGACAAATGAGTCCAACACTTTTGTTGGACTTAACCTCGAGAAGAACTCGGAGAAGCTGCAGTTTTTGGGGTTGGGGCTCCATAACACCATTGATCT
GAAGGATTTGGATCGCGGGCAGACACTATCCCTGAGGCTTCTGGCTCTTAACTTTCTTGGATTGGATTACCATCCTCCAAGAAGATTGAAAAAGAGCCGGTGGTCTAAAG
ATCGCCTCTCAGAGTTACAGGTGGGACACACAACCTCAGATGTTTTTATC
Protein sequenceShow/hide protein sequence
LLNFLTNESNTFVGLNLEKNSEKLQFLGLGLHNTIDLKDLDRGQTLSLRLLALNFLGLDYHPPRRLKKSRWSKDRLSELQVGHTTSDVFI