; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g1134 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1134
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA polymerase delta small subunit
Genome locationMC05:15479352..15481442
RNA-Seq ExpressionMC05g1134
SyntenyMC05g1134
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443054.1 PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo]9.93e-4765.31Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ
        MDSSI    +VQHV +KSSDELLRKFAEVG+        + V K RR+R      N E+C+SP     GGGVVER+ LI   GR      K GIGNGRSQ
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKSILGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

XP_022158341.1 uncharacterized protein LOC111024849 [Momordica charantia]2.33e-86100Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL
        MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL

Query:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
        GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
Subjt:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

XP_022935142.1 uncharacterized protein LOC111442101 [Cucurbita moschata]3.32e-4664.63Show/hide
Query:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ
        SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        V K RRRR        E+CESP     GGGVVER+ LIP AGR      K GIG+G  RSQ
Subjt:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKS LGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

XP_022983155.1 uncharacterized protein LOC111481793 [Cucurbita maxima]6.68e-4664.63Show/hide
Query:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ
        SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        V K RRRR        E+CESP     GGGVVER+ LIP AGR      K GIG+G  RSQ
Subjt:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKS LGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

XP_038905728.1 uncharacterized protein LOC120091691 [Benincasa hispida]5.72e-4665.31Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ
        MDSSI   ++VQHV +KSSDELLRKFAEVG+ +        V K RR+R        E+CESP  G   GGVVER+ LI   GR      K GIGNGRSQ
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKSILGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

TrEMBL top hitse value%identityAlignment
A0A1S3B7W3 uncharacterized protein LOC1034867644.81e-4765.31Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ
        MDSSI    +VQHV +KSSDELLRKFAEVG+        + V K RR+R      N E+C+SP     GGGVVER+ LI   GR      K GIGNGRSQ
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKSILGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

A0A5A7TJU8 Uncharacterized protein4.81e-4765.31Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ
        MDSSI    +VQHV +KSSDELLRKFAEVG+        + V K RR+R      N E+C+SP     GGGVVER+ LI   GR      K GIGNGRSQ
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNGRSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKSILGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

A0A6J1E0N1 uncharacterized protein LOC1110248491.13e-86100Show/hide
Query:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL
        MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL
Subjt:  MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSIL

Query:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
        GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
Subjt:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

A0A6J1F4R1 uncharacterized protein LOC1114421011.61e-4664.63Show/hide
Query:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ
        SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        V K RRRR        E+CESP     GGGVVER+ LIP AGR      K GIG+G  RSQ
Subjt:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKS LGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

A0A6J1J4Z4 uncharacterized protein LOC1114817933.23e-4664.63Show/hide
Query:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ
        SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        V K RRRR        E+CESP     GGGVVER+ LIP AGR      K GIG+G  RSQ
Subjt:  SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRN-----KFGIGNG--RSQ

Query:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
         LR+RDFRNKS LGAIQKTWRRTVEGASK+LLE+HYNTHRRLISDIV
Subjt:  PLRVRDFRNKSILGAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42110.1 unknown protein7.9e-1740.3Show/hide
Query:  VNSSVQHVTKKSSDELLRKFAEVGAV-AVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLI--PAAGRNKFGI---GNGRSQPLRVRDFRNKSIL
        + + + HV KKSSDELLRKFA+   V   +K  +RR +  + +  +    +      G+VER+RL+  PA+ R    I    +G+S        RNKS++
Subjt:  VNSSVQHVTKKSSDELLRKFAEVGAV-AVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLI--PAAGRNKFGI---GNGRSQPLRVRDFRNKSIL

Query:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV
          I KTWR+T+EGAS++ +E+HYN HRRL +D+V
Subjt:  GAIQKTWRRTVEGASKMLLERHYNTHRRLISDIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCGATTGTGGTTAATAGCAGCGTTCAGCACGTGACGAAGAAGTCCTCCGACGAGCTGCTGAGGAAATTTGCTGAAGTGGGGGCGGTGGCGGTGGCGAAGCC
GCGGCGGAGGAGGGGCCGGATTGTGAGGGAAAATATTGAGCAGTGCGAGAGCCCTGTTGGCGGCGTTGGCGGCGGCGGAGTTGTTGAGCGGCGGCGGCTGATTCCGGCGG
CGGGGAGGAACAAATTTGGGATTGGAAATGGAAGGTCTCAGCCGCTGAGGGTTAGGGATTTCAGAAACAAGTCTATCCTTGGAGCCATTCAAAAGACATGGCGAAGAACA
GTGGAAGGGGCTTCAAAGATGTTATTAGAGAGACATTACAACACACACAGACGTTTGATAAGTGACATTGTCTGA
mRNA sequenceShow/hide mRNA sequence
AGAAAATTAAAAAATAAATAAATAAAACAGAGTAATTAAATTGTCTTCTTCGTATCCTCAATTATTCATTCCGCAACGGCTATATTCTATCAACTTTTTTTAAACAACAA
ATAAAAACAAAATTGTTCACTAACACCTACACCACAACGGCTTAATTTCCTCTTTATTTCCAACCCAAAGCCACCTTCGTTTCTCACTCTACAGTTTTTTAATTTTTTTT
TTTTGTTCTCTCTCTCCCTCTCTCCTCTCTCTCTAGAATGGATTCTTCGATTGTGGTTAATAGCAGCGTTCAGCACGTGACGAAGAAGTCCTCCGACGAGCTGCTGAGGA
AATTTGCTGAAGTGGGGGCGGTGGCGGTGGCGAAGCCGCGGCGGAGGAGGGGCCGGATTGTGAGGGAAAATATTGAGCAGTGCGAGAGCCCTGTTGGCGGCGTTGGCGGC
GGCGGAGTTGTTGAGCGGCGGCGGCTGATTCCGGCGGCGGGGAGGAACAAATTTGGGATTGGAAATGGAAGGTCTCAGCCGCTGAGGGTTAGGGATTTCAGAAACAAGTC
TATCCTTGGAGCCATTCAAAAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGATGTTATTAGAGAGACATTACAACACACACAGACGTTTGATAAGTGACATTGTCT
GATTTTCTCTCCCTCTTACTATTAAATTATTAGAGGAGGCTCAAAAGTCCATTTTACCCTCCCTATCTTATCTTTAAATATTTATTTAATTAATATTCGAAGCTTATTAT
GCTTCATAATCATGGTAAAATAAAGTTTAATTTTCTATAAATCTATAGATTGACGTCATGTGTAAGCTTAATTATTCAATTAATCTATAGATTGACATCAATTAAGC
Protein sequenceShow/hide protein sequence
MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQKTWRRT
VEGASKMLLERHYNTHRRLISDIV