; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g1274 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1274
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationMC05:16972334..16974708
RNA-Seq ExpressionMC05g1274
SyntenyMC05g1274
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]4.19e-113100Show/hide
Query:  MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS
        MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS
Subjt:  MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS

Query:  TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
Subjt:  TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

XP_022935108.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]1.05e-6696.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]4.26e-6695.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]3.66e-6796.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]4.14e-7380Show/hide
Query:  PTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFV
        P+R F F   + P  F    L +    FHF R+ Q LN+MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPF+LSKFV
Subjt:  PTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFV

Query:  EVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        EVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGEFKPLF+
Subjt:  EVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

TrEMBL top hitse value%identityAlignment
A0A0A0LGP0 Uncharacterized protein7.69e-6888.89Show/hide
Query:  HFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTST
        HF R+L+SLN+MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTST
Subjt:  HFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTST

Query:  FNQLCQLANGEFKPLFI
        FNQLC  ANGEFKPLFI
Subjt:  FNQLCQLANGEFKPLFI

A0A6J1CTX6 replication protein A 14 kDa subunit B2.03e-113100Show/hide
Query:  MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS
        MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS
Subjt:  MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKS

Query:  TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
Subjt:  TDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

A0A6J1F9M2 replication protein A 14 kDa subunit B-like5.07e-6796.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like1.77e-6796.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like2.06e-6695.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B3.2e-3363.21Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP   L+ ++EVIGIA+TD +IR +VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A5.2e-3159.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit3.5e-2750.94Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+    +S +VE+IGIA+ +++IR +V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.7e-3259.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.7e-3259.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein2.3e-3463.21Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP   L+ ++EVIGIA+TD +IR +VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGACGATCTCTCGCTTGATCTCTTTATAAAGCTGCCTCTCTTCTCAACACACCCAACTCGAAACTTCAATTTTGCCGCTTTCAAAAACCCGCGCTCTTTTTC
TTCTCTATCTCTCGCGGTTCGATCGAATTCTTTCCATTTCCCTCGAAGTCTGCAATCGCTGAATCGGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTT
TACGCCTGTATGTTGGGAGAAGAGTCCGGGCAGTGATTCAGGTTCAGTCTGAAGGCAATGGAGTCATATATGGTAAATCGACTGACGACAACCAGATTATTGTGAAAGGC
TCTCCACCATTTTCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACTGACAAATCGATTCGACCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATC
TACCTTCAATCAACTATGTCAACTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
GTGAAAGGGTTTCCAAATGAGACTACTTTAAGAATTAAAATAATTTAAACAATATCTATATATATATTTTTTTATTGGGGCTTTGTCATATAAGAAATTTATGAAATCAC
GAAAATGAGAAAAAGTTTACCGTCCTTTGCTTGCTCGCGTGAGCGCGTCTCCACCGTCCGATGAAAGAAGACGATCTCTCGCTTGATCTCTTTATAAAGCTGCCTCTCTT
CTCAACACACCCAACTCGAAACTTCAATTTTGCCGCTTTCAAAAACCCGCGCTCTTTTTCTTCTCTATCTCTCGCGGTTCGATCGAATTCTTTCCATTTCCCTCGAAGTC
TGCAATCGCTGAATCGGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGGAGAAGAGTCCGGGCAGTGATTCAGGTTCAGTCT
GAAGGCAATGGAGTCATATATGGTAAATCGACTGACGACAACCAGATTATTGTGAAAGGCTCTCCACCATTTTCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGA
TACTGACAAATCGATTCGACCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTATGTCAACTTGCTAATGGGGAGTTCAAACCCTTGT
TTATCTGATAATCTAGCCAGACATTCTTTGGCAAGAAGGCTCAAGCCCTACCTTCCCCTACTGTGACACGCTAAGTTGCTAATGTTTTCTTCATGCGCTTCAGAATCTCC
CGAGATTTATCGTTCATATGGTAGAAAACTTTTCAGGTAATGGACATATAAATTTTAAATCTGCATTGTATGTTTGTGTTAGAATATGTTAGAATGAACATTGACTCGAA
AAATTCATTAAAAATCTATTTTAATCAACTTTGTTCGTTGCATTTTGGGGTTATAAGCCTTTGTCAACGTGGAAAAACTGCTAACCAAAAAGCCGAAACACTATTTCCTT
ATCTCAGTTTATAGAAATTATATGTTGAAT
Protein sequenceShow/hide protein sequence
MKEDDLSLDLFIKLPLFSTHPTRNFNFAAFKNPRSFSSLSLAVRSNSFHFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG
SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI