; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g1420 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1420
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationMC05:18304490..18305396
RNA-Seq ExpressionMC05g1420
SyntenyMC05g1420
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001295779.1 nuclear transcription factor Y subunit B-1 [Cucumis sativus]1.48e-8796.38Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP
        DYIDPLKTYLTKYREGDTKGSAKGGD SA KEAH P P
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP

XP_022145604.1 nuclear transcription factor Y subunit B-1 isoform X1 [Momordica charantia]1.53e-9298.58Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG
        DYIDPLKTYLTKYRE  GDTKGSAKGGDSSANKEAHHPNPG
Subjt:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG

XP_022145605.1 nuclear transcription factor Y subunit B-1 isoform X2 [Momordica charantia]1.01e-9298.58Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG
        DYIDPLKTYLTKYRE  GDTKGSAKGGDSSANKEAHHPNPG
Subjt:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG

XP_022935572.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita moschata]2.46e-8797.76Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH
        DYIDPLKTYLTKYREGDTKGSAKGGD+SA KEAH
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH

XP_022983508.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita maxima]2.46e-8797.76Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH
        DYIDPLKTYLTKYREGDTKGSAKGGD+SA KEAH
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH

TrEMBL top hitse value%identityAlignment
A0A1S3B658 nuclear transcription factor Y subunit B-1 isoform X27.16e-8896.38Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP
        DYIDPLKTYLTKYREGDTKGSAKGGD SA KEAH P P
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP

A0A6J1CUY4 nuclear transcription factor Y subunit B-1 isoform X24.91e-9398.58Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG
        DYIDPLKTYLTKYRE  GDTKGSAKGGDSSANKEAHHPNPG
Subjt:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG

A0A6J1CVR4 nuclear transcription factor Y subunit B-1 isoform X17.40e-9398.58Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG
        DYIDPLKTYLTKYRE  GDTKGSAKGGDSSANKEAHHPNPG
Subjt:  DYIDPLKTYLTKYRE--GDTKGSAKGGDSSANKEAHHPNPG

A0A6J1J7Y3 nuclear transcription factor Y subunit B-1-like isoform X21.19e-8797.76Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH
        DYIDPLKTYLTKYREGDTKGSAKGGD+SA KEAH
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAH

S6DEZ2 Nuclear transcription factor Y subunit B-8-like7.16e-8896.38Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP
        DYIDPLKTYLTKYREGDTKGSAKGGD SA KEAH P P
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNP

SwissProt top hitse value%identityAlignment
P25209 Nuclear transcription factor Y subunit B9.0e-5380.28Show/hide
Query:  MADGPASP--GGGSHESGEQSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
        MA+ PASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
Subjt:  MADGPASP--GGGSHESGEQSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA

Query:  MATLGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEA
        MATLGFEDYI+PLK YL KYR  EGD+K +AK  D S  K+A
Subjt:  MATLGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEA

Q60EQ4 Nuclear transcription factor Y subunit B-36.9e-5377.7Show/hide
Query:  MADGPASP--GGGSHESGEQSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
        MADGP SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
Subjt:  MADGPASP--GGGSHESGEQSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN

Query:  GDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKE
        GDDLLWAMATLGFEDYI+PLK YL KYR  EGD+K +AK GD S  K+
Subjt:  GDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKE

Q67XJ2 Nuclear transcription factor Y subunit B-102.2e-5485.94Show/hide
Query:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+QSPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYR--EGDTKGSAKGGDSSANKE
        K YL +YR  EGDTKGS KGG+SSA ++
Subjt:  KTYLTKYR--EGDTKGSAKGGDSSANKE

Q8VYK4 Nuclear transcription factor Y subunit B-85.3e-5379.31Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG
        LGFEDY++PLK YL +YR  EGDTKGSAKGGD +A K+      G
Subjt:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG

Q9SLG0 Nuclear transcription factor Y subunit B-16.1e-4975.56Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEA
        DY++PLK YL +YR  EGD KGS K GD S N++A
Subjt:  DYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEA

Arabidopsis top hitse value%identityAlignment
AT2G37060.1 nuclear factor Y, subunit B83.8e-5479.31Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG
        LGFEDY++PLK YL +YR  EGDTKGSAKGGD +A K+      G
Subjt:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG

AT2G37060.2 nuclear factor Y, subunit B83.8e-5479.31Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG
        LGFEDY++PLK YL +YR  EGDTKGSAKGGD +A K+      G
Subjt:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG

AT2G37060.3 nuclear factor Y, subunit B83.8e-5479.31Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG
        LGFEDY++PLK YL +YR  EGDTKGSAKGGD +A K+      G
Subjt:  LGFEDYIDPLKTYLTKYR--EGDTKGSAKGGDSSANKEAHHPNPG

AT2G38880.7 nuclear factor Y, subunit B11.3e-5176.69Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEA
        DY++PLK YL +YREGD KGS K GD S N++A
Subjt:  DYIDPLKTYLTKYREGDTKGSAKGGDSSANKEA

AT3G53340.1 nuclear factor Y, subunit B101.5e-5585.94Show/hide
Query:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+QSPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYR--EGDTKGSAKGGDSSANKE
        K YL +YR  EGDTKGS KGG+SSA ++
Subjt:  KTYLTKYR--EGDTKGSAKGGDSSANKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAAT
ATTAGCCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACC
AGCGAGGCTAGTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCG
CTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCGTCAGCTAACAAAGAAGCTCATCATCCAAACCCTGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAAT
ATTAGCCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACC
AGCGAGGCTAGTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCG
CTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCGTCAGCTAACAAAGAAGCTCATCATCCAAACCCTGGT
Protein sequenceShow/hide protein sequence
MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDP
LKTYLTKYREGDTKGSAKGGDSSANKEAHHPNPG