; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC05g1451 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC05g1451
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionGlycine rich RNA binding protein
Genome locationMC05:18555924..18557530
RNA-Seq ExpressionMC05g1451
SyntenyMC05g1451
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR95450.1 RNA recognition motif domain-containing protein [Cinnamomum micranthum f. kanehirae]2.47e-7580.82Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVSGLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E GFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

XP_010260092.1 PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera]5.45e-7478.77Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF SAFRR L+GSS  SS LQ   ++  +IR  STLT PKLF+SGLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYA+IE+AEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTNKT+GWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

XP_022145577.1 organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]1.41e-99100Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG

XP_023877122.1 organelle RRM domain-containing protein 2, mitochondrial [Quercus suber]2.79e-7477.4Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTN+T+GWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

XP_042943832.1 organelle RRM domain-containing protein 2, mitochondrial [Carya illinoinensis]2.70e-7478.08Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF  + RR+L+GSS ASS L     Q+ +IRF +TLT+PKLF+SGLSRLTTD+KLKEAFSPFGQL++AKVI DRA+GRSKGFGFVTYASIEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP++ GFRTNKT+GWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A3S3NHY1 RNA recognition motif domain-containing protein1.20e-7580.82Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVSGLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E GFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A5B7A8G9 RRM domain-containing protein9.21e-7578.77Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRR+LNGSS  SS +     QF +IR  STLT PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVI DRASGRSKGFGFVTYA+I++A KA+E 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAK+LDGWVIFVDPAKPREPRPPPQP  +P+E GFRTNKT+GWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A5B7BY51 RRM domain-containing protein2.64e-7479.45Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFAS+FRR LNGSS  SS L     QF +IR  STL+ PKLFVSGLSRLTTD+KLKE FS FGQL+EAKVI DRASGRSKGFGFVTYA+IE+AEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAK+LDGWVIFVDPAKPREPRPPPQP  +P+E GFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A6J1CX06 organelle RRM domain-containing protein 2, mitochondrial-like6.84e-100100Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG

A0A7N2LNA5 RRM domain-containing protein1.35e-7477.4Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTN+T+GWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic2.1e-1550.63Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        +LFV+GLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y + E    A + MN + ++GW+I VD AK R
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic4.4e-1851.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial3.3e-2155.68Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic2.7e-1545.19Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREP-------RPPPQPNHEPTE
        KL+VSGLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y + EEA KA + M+ KFLDG VIFV+ AK R         R  P+P  +P  
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREP-------RPPPQPNHEPTE

Query:  GFRT
         FRT
Subjt:  GFRT

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial7.1e-1655.56Show/hide
Query:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 65.0e-1755.56Show/hide
Query:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

AT2G27330.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1642.34Show/hide
Query:  LQQFQFQ-FTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        L QF ++ FT + F  + ++  LFV G+S  +T++ L +AFS +GQ+++  VI D+   R KGF +VT++S EEAEKA  E+NA+ +DG V+ +D  K  
Subjt:  LQQFQFQ-FTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Query:  EPRPP-PQPNH
        +  PP  +PNH
Subjt:  EPRPP-PQPNH

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-4666.44Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S+FRR++ GSS   SS          +R  STLT+P+LFVSGLSRLTT++KL++AF+ FGQLV+A+VITDR SGRSKGFGFVTYA+IE+AEKA+ E
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQ-----PNHEPTEGFRTNKTIGWC
        MNAKFLDGWVIFVDPA+PREPR P Q     P+ E   GF TNKTIGWC
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQ-----PNHEPTEGFRTNKTIGWC

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein3.1e-1951.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-2255.68Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTACTG
ATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTACGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGGGTT
ATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGGTTTCAGAACAAATAAGACGATCGGTTGGTGCGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTACTG
ATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTACGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGGGTT
ATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGGTTTCAGAACAAATAAGACGATCGGTTGGTGCGGT
Protein sequenceShow/hide protein sequence
MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWV
IFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG