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MC06g0009 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g0009
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationMC06:91751..92234
RNA-Seq ExpressionMC06g0009
SyntenyMC06g0009
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW65318.1 hypothetical protein CK203_058130 [Vitis vinifera]2.38e-1032.06Show/hide
Query:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH
        +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF+HCS     W  L     +    PR I+   +    G   
Subjt:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH

Query:  LER--LSFYRAATALIWHIWLERHGPKFEDK
         +R  + +  A  AL+W +W ER+   FEDK
Subjt:  LER--LSFYRAATALIWHIWLERHGPKFEDK

RVW92607.1 putative ribonuclease H protein [Vitis vinifera]4.15e-1032.06Show/hide
Query:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH
        +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF+HCS     W  L     +    PR I+   +    G   
Subjt:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH

Query:  LER--LSFYRAATALIWHIWLERHGPKFEDK
         +R  + +  A  AL+W +W ER+   FEDK
Subjt:  LER--LSFYRAATALIWHIWLERHGPKFEDK

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]5.96e-1449.37Show/hide
Query:  SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW
        SI+AP    IW  KI K++K FLWSLAYRSLNT K +QK +++  +SPS+ C   K        LDHLF+HC+F  + W
Subjt:  SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]1.61e-1645.63Show/hide
Query:  SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEV
        S +  IW  KI KK+K FLWSLAYRSLN Q  LQ+K+ N ++SPSI    +K         DHLF+HC FA +GW  +F LF  +  C P+ I+  + + 
Subjt:  SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEV

Query:  LIG
        L G
Subjt:  LIG

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]3.47e-1030.77Show/hide
Query:  NSIIAPIWNFKIPK-----KIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLF-FGISTCFPRYING
         ++  P W   + K     ++K+F+W +A+  +N   VLQ++     ISP   C   K N     +++HLF+HC F+++ W  LL  FG+    PR +  
Subjt:  NSIIAPIWNFKIPK-----KIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLF-FGISTCFPRYING

Query:  WLYEVLIGCLHLERLSFYRAATALIWHIWLERHGPKFEDKDST
         L   + G    + + +  A  A IW IWLER+   FED +++
Subjt:  WLYEVLIGCLHLERLSFYRAATALIWHIWLERHGPKFEDKDST

TrEMBL top hitse value%identityAlignment
A0A438FZH6 zf-RVT domain-containing protein1.15e-1032.06Show/hide
Query:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH
        +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF+HCS     W  L     +    PR I+   +    G   
Subjt:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH

Query:  LER--LSFYRAATALIWHIWLERHGPKFEDK
         +R  + +  A  AL+W +W ER+   FEDK
Subjt:  LER--LSFYRAATALIWHIWLERHGPKFEDK

A0A438H449 Putative ribonuclease H protein2.01e-1032.06Show/hide
Query:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH
        +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF+HCS     W  L     +    PR I+   +    G   
Subjt:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH

Query:  LER--LSFYRAATALIWHIWLERHGPKFEDK
         +R  + +  A  AL+W +W ER+   FEDK
Subjt:  LER--LSFYRAATALIWHIWLERHGPKFEDK

A0A438I7G2 Putative ribonuclease H protein2.01e-1032.06Show/hide
Query:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH
        +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF+HCS     W  L     +    PR I+   +    G   
Subjt:  IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLH

Query:  LER--LSFYRAATALIWHIWLERHGPKFEDK
         +R  + +  A  AL+W +W ER+   FEDK
Subjt:  LER--LSFYRAATALIWHIWLERHGPKFEDK

A0A5D3C7R2 DUF21 domain-containing protein2.89e-1449.37Show/hide
Query:  SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW
        SI+AP    IW  KI K++K FLWSLAYRSLNT K +QK +++  +SPS+ C   K        LDHLF+HC+F  + W
Subjt:  SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW

A0A5D3E632 Protein FAM91A17.78e-1745.63Show/hide
Query:  SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEV
        S +  IW  KI KK+K FLWSLAYRSLN Q  LQ+K+ N ++SPSI    +K         DHLF+HC FA +GW  +F LF  +  C P+ I+  + + 
Subjt:  SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEV

Query:  LIG
        L G
Subjt:  LIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAACTCAATTATTGCTCCCATTTGGAATTTTAAAATACCTAAGAAAATCAAAGTGTTCCTTTGGTCCTTGGCCTATAGAAGTTTAAATACTCAAAAGGTTCTTCAAAA
GAAATACAGAAATTGGACTATTTCCCCCTCTATTGTTTGTGCAATTGTGAAGGTGAATCCTCCACTTATTCATCAATTAGACCACTTATTCGTCCATTGTTCTTTTGCGG
CCCGAGGCTGGGTCTTTCTGCTGTTTTTTGGCATCTCAACCTGTTTTCCGAGATATATCAATGGATGGTTATATGAAGTCTTGATAGGTTGTCTTCACCTAGAAAGGCTA
AGTTTCTATAGAGCGGCGACAGCTCTTATTTGGCACATTTGGTTAGAAAGGCATGGGCCCAAGTTTGAAGATAAGGATTCTACTTTTGACACTTTTAGTATGAAATGTAC
AGCATACAGCTTCTTGGTCATGTCTTGCAAA
mRNA sequenceShow/hide mRNA sequence
AAGAACTCAATTATTGCTCCCATTTGGAATTTTAAAATACCTAAGAAAATCAAAGTGTTCCTTTGGTCCTTGGCCTATAGAAGTTTAAATACTCAAAAGGTTCTTCAAAA
GAAATACAGAAATTGGACTATTTCCCCCTCTATTGTTTGTGCAATTGTGAAGGTGAATCCTCCACTTATTCATCAATTAGACCACTTATTCGTCCATTGTTCTTTTGCGG
CCCGAGGCTGGGTCTTTCTGCTGTTTTTTGGCATCTCAACCTGTTTTCCGAGATATATCAATGGATGGTTATATGAAGTCTTGATAGGTTGTCTTCACCTAGAAAGGCTA
AGTTTCTATAGAGCGGCGACAGCTCTTATTTGGCACATTTGGTTAGAAAGGCATGGGCCCAAGTTTGAAGATAAGGATTCTACTTTTGACACTTTTAGTATGAAATGTAC
AGCATACAGCTTCTTGGTCATGTCTTGCAAA
Protein sequenceShow/hide protein sequence
KNSIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFGISTCFPRYINGWLYEVLIGCLHLERL
SFYRAATALIWHIWLERHGPKFEDKDSTFDTFSMKCTAYSFLVMSCK