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MC06g0346 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g0346
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationMC06:2793266..2793520
RNA-Seq ExpressionMC06g0346
SyntenyMC06g0346
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589634.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.05e-3580Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQTNC  DVITLNTVIKGFC +GSIE+ALKVL+DMMI + C PD+V FTTII GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

XP_008453476.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo]1.90e-3578.82Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+  +FC PD+V FTTI+ GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

XP_011649150.1 pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativus]3.84e-3680Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT V MLQTNCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+  +FC PD+V FTTII+GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

XP_022132241.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia]2.44e-3783.53Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQTNCQ DVITLN VIKGFC  GSIE+ALKVLNDMMI +FC PDYV FTTII GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

XP_022134613.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momordica charantia]1.32e-48100Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

TrEMBL top hitse value%identityAlignment
A0A0A0LV25 Uncharacterized protein1.86e-3680Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT V MLQTNCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+  +FC PD+V FTTII+GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

A0A1S3BWE8 pentatricopeptide repeat-containing protein At3g180209.21e-3678.82Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+  +FC PD+V FTTI+ GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

A0A5D3DXA6 Pentatricopeptide repeat-containing protein1.15e-3578.82Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+  +FC PD+V FTTI+ GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

A0A6J1BRQ7 pentatricopeptide repeat-containing protein At3g18020-like1.18e-3783.53Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRA+CL N STELLNT VVMLQTNCQ DVITLN VIKGFC  GSIE+ALKVLNDMMI +FC PDYV FTTII GLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

A0A6J1C2H5 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g180206.37e-49100Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

SwissProt top hitse value%identityAlignment
Q3EDF8 Pentatricopeptide repeat-containing protein At1g099001.7e-0631.76Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YN  LR++C + K  + +     MLQ +C  DVIT   +I+  C    +  A+K+L++M   + C PD V +  ++ G+   GR+
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

Q9LFF1 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic1.7e-0632.94Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        +N  +  +C A      +    VMLQ     DV T N+VI G C +G +++A++VL D MI + C+P+ V + T+I  L    ++
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

Q9LQ15 Pentatricopeptide repeat-containing protein At1g62914, mitochondrial3.9e-0635.44Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGL
        YNI +   C  ++ +  L     M++   + D++TLN+++ GFCH   I  A+  L D M+     PD V FTT+I+GL
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGL

Q9LSK8 Pentatricopeptide repeat-containing protein At3g180204.0e-1953.57Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGR
        YNIYLR +C+ +  TE+LN  V MLQ +C+ D  TLNTVI G C +G ++ A+KVL+DMM  +FCAPD V   T++ GLL  GR
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGR

Q9ZUE9 Pentatricopeptide repeat-containing protein At2g060001.7e-0932.94Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+     C+PD V +T++I G    G++
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

Arabidopsis top hitse value%identityAlignment
AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.2e-0731.76Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        YN  LR++C + K  + +     MLQ +C  DVIT   +I+  C    +  A+K+L++M   + C PD V +  ++ G+   GR+
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

AT2G06000.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-1032.94Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+     C+PD V +T++I G    G++
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

AT2G06000.2 Pentatricopeptide repeat (PPR) superfamily protein1.2e-1032.94Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+     C+PD V +T++I G    G++
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

AT3G18020.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-2053.57Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGR
        YNIYLR +C+ +  TE+LN  V MLQ +C+ D  TLNTVI G C +G ++ A+KVL+DMM  +FCAPD V   T++ GLL  GR
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGR

AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0732.94Show/hide
Query:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI
        +N  +  +C A      +    VMLQ     DV T N+VI G C +G +++A++VL D MI + C+P+ V + T+I  L    ++
Subjt:  YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAA
TACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGA
CTATTATATATGGGTTACTGAATGTTGGGAGGATC
mRNA sequenceShow/hide mRNA sequence
TACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAA
TACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGA
CTATTATATATGGGTTACTGAATGTTGGGAGGATC
Protein sequenceShow/hide protein sequence
YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI