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MC06g0461 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g0461
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationMC06:3787503..3787722
RNA-Seq ExpressionMC06g0461
SyntenyMC06g0461
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU31043.1 hypothetical protein TSUD_214790 [Trifolium subterraneum]1.28e-2097.62Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

KAG2407641.1 uncharacterized protein HKW66_Vig0024630 [Vigna angularis]6.44e-2195.45Show/hide
Query:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        +QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMM+T
Subjt:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

KHN17560.1 Small nuclear ribonucleoprotein E [Glycine soja]1.50e-2095.35Show/hide
Query:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVNIKKKS+KTLGRILLKGDNITLMMNT
Subjt:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

MCI19947.1 small nuclear ribonucleoprotein E-like [Trifolium medium]1.55e-2197.67Show/hide
Query:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        QGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Subjt:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

XP_027332277.1 small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius]4.78e-2193.18Show/hide
Query:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        +QGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNT
Subjt:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

TrEMBL top hitse value%identityAlignment
A0A151SRH5 Small nuclear ribonucleoprotein E8.69e-21100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A2Z6MMY3 Sm protein E6.21e-2197.62Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A392Q7T6 Sm protein E (Fragment)7.52e-2297.67Show/hide
Query:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        QGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Subjt:  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A6J1C3K6 Small nuclear ribonucleoprotein E9.18e-21100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A6J1I7N4 Small nuclear ribonucleoprotein E9.18e-21100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E7.9e-1175.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E7.9e-1175.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E7.9e-1175.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E7.9e-1175.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

Q7ZUG0 Small nuclear ribonucleoprotein E6.0e-1175.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.2e-1481.82Show/hide
Query:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        + GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Subjt:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein2.7e-0672.41Show/hide
Query:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLG
        + GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.2e-1483.72Show/hide
Query:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        + GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN
Subjt:  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAA
TATTACGTTAATGATGAACACG
mRNA sequenceShow/hide mRNA sequence
GTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAA
TATTACGTTAATGATGAACACG
Protein sequenceShow/hide protein sequence
VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT