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MC06g0492 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g0492
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationMC06:4057009..4057916
RNA-Seq ExpressionMC06g0492
SyntenyMC06g0492
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]2.73e-4870.16Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTA--TKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI
        M DS+FIF G S V   L N NN R F    AKRT DS +    S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKI
Subjt:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTA--TKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI

Query:  GAFLVVPFCVFLISSFAK-QTDSS
        GA LVVPFCVFL+ SF+K  +DSS
Subjt:  GAFLVVPFCVFLISSFAK-QTDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]4.19e-5071.2Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVN---NRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLK
        M DS+FIF G SAV   L N N   N R F    AKRT DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLK
Subjt:  MADSTFIFSGPSAVSRSLFNVN---NRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLK

Query:  IGAFLVVPFCVFLISSFAK-QTDSS
        IGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  IGAFLVVPFCVFLISSFAK-QTDSS

XP_022135305.1 uncharacterized protein LOC111007301 [Momordica charantia]6.47e-80100Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
        MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
Subjt:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA

Query:  FLVVPFCVFLISSFAKQTDSS
        FLVVPFCVFLISSFAKQTDSS
Subjt:  FLVVPFCVFLISSFAKQTDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]4.70e-4870.49Show/hide
Query:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+   L  + NN R F T  AKRT DS +  S Q    +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]1.75e-4871.31Show/hide
Query:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADSTFIF+G SA+   L  + NN R F T  AKRT DS +  S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein1.32e-4870.16Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTA--TKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI
        M DS+FIF G S V   L N NN R F    AKRT DS +    S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKI
Subjt:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTA--TKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKI

Query:  GAFLVVPFCVFLISSFAK-QTDSS
        GA LVVPFCVFL+ SF+K  +DSS
Subjt:  GAFLVVPFCVFLISSFAK-QTDSS

A0A1S3B903 uncharacterized protein LOC1034873292.03e-5071.2Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVN---NRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLK
        M DS+FIF G SAV   L N N   N R F    AKRT DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLK
Subjt:  MADSTFIFSGPSAVSRSLFNVN---NRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLK

Query:  IGAFLVVPFCVFLISSFAK-QTDSS
        IGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  IGAFLVVPFCVFLISSFAK-QTDSS

A0A6J1C0R6 uncharacterized protein LOC1110073013.13e-80100Show/hide
Query:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
        MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
Subjt:  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA

Query:  FLVVPFCVFLISSFAKQTDSS
        FLVVPFCVFLISSFAKQTDSS
Subjt:  FLVVPFCVFLISSFAKQTDSS

A0A6J1EZT4 uncharacterized protein LOC1114408612.28e-4870.49Show/hide
Query:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+   L  + NN R F T  AKRT DS +  S Q    +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

A0A6J1KT82 uncharacterized protein LOC1114980169.26e-4869.67Show/hide
Query:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+   L  + NN R F T  AKRT DS +  S Q    +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIG
Subjt:  MADSTFIFSGPSAVSRSLF-NVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein9.6e-2253.92Show/hide
Query:  NVNNRRNFR---TALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK
        N N  R+F    T ++KR D S   KSN+E       ++VPN +VAR  ++VL LGF+DAGYSGDWSRIG I+KE+E+LLKI AFLVVP C+FL  SF+ 
Subjt:  NVNNRRNFR---TALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK

Query:  QT
         +
Subjt:  QT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTCCACCTTTATCTTCTCCGGTCCTTCCGCCGTATCTCGCTCCCTTTTCAACGTCAACAATCGCAGAAATTTTCGAACCGCATTGGCAAAACGAACCGACGA
TTCCACCGCCACTAAATCGAATCAAGAAAATCAATTCGAGTTTCCGTCGCTGAGAGTTCCAAATCCACTTGTCGCTCGATTTGTCGTTTCGGTTCTCGGATTAGGGTTCG
TCGATGCAGGGTACAGTGGAGACTGGTCTAGAATTGGAGCAATAACTAAAGAGAGCGAAGATTTGCTGAAGATTGGAGCTTTCTTAGTGGTTCCGTTTTGCGTATTTCTG
ATATCTTCTTTTGCCAAACAGACGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
GTCCTTTGCAAAAAAAATATTTATATAAAAAATAAAGGATGTGGCTGTAATTAATTTTGGCGATAATTTATTTCTGATTTTCCATAGTGGACGCTGGCGAAGCAAAAGAT
AAGGAAAGAGCGACAGAAAATATGGCAGATTCCACCTTTATCTTCTCCGGTCCTTCCGCCGTATCTCGCTCCCTTTTCAACGTCAACAATCGCAGAAATTTTCGAACCGC
ATTGGCAAAACGAACCGACGATTCCACCGCCACTAAATCGAATCAAGAAAATCAATTCGAGTTTCCGTCGCTGAGAGTTCCAAATCCACTTGTCGCTCGATTTGTCGTTT
CGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGACTGGTCTAGAATTGGAGCAATAACTAAAGAGAGCGAAGATTTGCTGAAGATTGGAGCTTTCTTAGTG
GTTCCGTTTTGCGTATTTCTGATATCTTCTTTTGCCAAACAGACGGATTCTTCGTAACCGTACCGGTTAGTGACTAGCAGTAATTGCAATGGTAGTTCGAGTTCCCCTTT
GCATATTTCAAACAATTTTTCTTTTCTATTAGATGTAATATAAATAAATTCAGTAACAACTAAACAAATTCAATAAATATCTTCCTTGTTGAGGACTGAGGAGTCAGACT
TTTTACATCTCCGGTGTGTATATTATTGAATGAATGGTCTGTATTTTTTATTTTAAGAGGGCACTCTTTGTTGACAAAATGAAAGAGACTCTTGAATTTGTAAGGAGTAC
GAGCAAATTAATTTACAGGATAATTTTAAATGAATCAAGTGTTTAGC
Protein sequenceShow/hide protein sequence
MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFL
ISSFAKQTDSS