CuGenDBv2

Gene ID	MC06g0815
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase III subunit rpc4
Genome location	MC06:6795405..6800241
RNA-Seq Expression	MC06g0815
Synteny	MC06g0815
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6588073.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia]

3.16e-162

81.6

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSS
        MEQDP KNN  AQRKMKFAPKAPPRR+PK EVKAE++E ADAAQA+DLLKRFNV       SAPTQVAFG+GGTS+++R+YG  KAGN+ RNEDGTLPSS
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSS

Query:  ISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKG
          KEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNE EFGEASE RTYDE+ TTPAMDLGLLE+NPETN+FFLQ+PPMVPVT+QSST EGM AA+S EQ+KG
Subjt:  ISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKG

Query:  SRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        S+  Q  CSLNE PSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQ++AAINVEGK CCIVGELSKRA+LTPDVDSMLK+IEDL
Subjt:  SRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

KAG7021962.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.42e-161

81.25

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSS
        MEQDP KNN  AQRKMKFAPKAPPRR+PK EVKAE++E ADAAQA+DLLKRFNV       SAPTQVAFG+GGTS+++R+YG  KAGN+ RNEDGTLPSS
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSS

Query:  ISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKG
          KEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNE EFGEASE RTYDE+ TTPAMDLGLLE+NPETN+FFLQ+PPMVPVT+QSST EGM AA+S EQ+K 
Subjt:  ISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKG

Query:  SRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        S+  Q  CSLNE PSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQ++AAINVEGK CCIVGELSKRA+LTPDVDSMLK+IEDL
Subjt:  SRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

XP_008450913.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo]

6.10e-161

79.18

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDPPKN T   RK+KFAPKAP RR+PKPEVKAE+ E+ DAAQA+DLLKRFN             +APTQVAFGSGG+S+T+RSYG+ KAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLP+S SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASEN TYDE+ TT AM+LGLLEENPET+VFFLQ+PPMVP+ KQSSTVE M + + S
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQ+  S+TRQ  CS+NELPSGSMGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQ+VAAIN+EGKHCCIVGELSKRAILTPDVDSML++IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

XP_022147557.1 DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]

2.63e-194

95.22

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFN   +         +APTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

XP_038878504.1 uncharacterized protein LOC120070724 [Benincasa hispida]

5.75e-166

82.25

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDPPKN T A RK+KFAPKAP RR+PKPEVKAEI E+ADAAQA+DLLKRFN   L         +APTQVAFGSGGTS+T+RSYG+ KAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLPSS SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASEN  YDE+ TTPAMDLGLLEENPE +VFFLQ+PPMVP+ KQSSTVEG  AA+S 
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQSKGS+ RQ  C +NELPSGSMGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQDVAA+NVEGK CCIVGELSKRAILTPDVDS+LK+IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWX7 Uncharacterized protein

3.44e-160

78.84

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQ+PPKN T A RK+KFAPKAP RR+PKPEVKAE+ E+ADAAQA+DLLKRFN             +APTQVAFGSGG+S+T+RSYG+ KAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLP+S SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASEN TYDE+ TT AM+LGLLEENPE +V FLQ+PPMVP+ KQSS+VE M + +SS
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQ+K S+ RQ  CS+NELPSGS+GKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQ+VAAINVEGK CCIVGELSKRAILTPDVDSMLK+IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

A0A1S3BPR1 DNA-directed RNA polymerase III subunit RPC4

2.95e-161

79.18

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDPPKN T   RK+KFAPKAP RR+PKPEVKAE+ E+ DAAQA+DLLKRFN             +APTQVAFGSGG+S+T+RSYG+ KAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLP+S SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASEN TYDE+ TT AM+LGLLEENPET+VFFLQ+PPMVP+ KQSSTVE M + + S
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQ+  S+TRQ  CS+NELPSGSMGKLLVYRSGAVKLKLGDI+YDVSSGMDCGFAQ+VAAIN+EGKHCCIVGELSKRAILTPDVDSML++IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

A0A6J1D2P1 DNA-directed RNA polymerase III subunit rpc4

1.27e-194

95.22

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFN   +         +APTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

A0A6J1F0U0 DNA-directed RNA polymerase III subunit RPC4-like

1.24e-157

79.18

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDP KNN  AQRKMKFAPKAPPRR+PK EVKAE++E ADAAQA+DLLKRFN             +APTQVAFG+GGTS+++R+YG  KAGN+ RNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLPSS  KEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNE EFGEASE RTYDE+ TTPAMDLGLLE+NPETN+FFLQ+PPMVPVT+QSST EGM AA+S 
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQ+K S+  Q  CSLNE PSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQ++AAINVEGK CCIVGELSKRA+LTPDVDSMLK+IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

A0A6J1HTZ8 uncharacterized protein LOC111467450

1.20e-157

78.5

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG
        MEQDP KNN  AQRKMKFAPKAPPRR+PK EVKAE++E ADAAQA+DLLKRFN             +APTQVAFG+GGTS+++R++G  KAGN+ RNEDG
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIF-----SAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDG

Query:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS
        TLPS   +EYVEPWDYYSYYPVTLPLRRPYSG+PDSLNE EFGEASE+RTYDE+ TTPAMDLGLLE+NPETN+FFLQ+PPMVPVT+QSST EGM AA+S 
Subjt:  TLPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSS

Query:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
        EQ+K S+  Q  CSLNE PSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQ++AAINVEGK CCIVGELSKRA+LTPDVDSMLK+IEDL
Subjt:  EQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

SwissProt top hits

e value

%identity

Alignment

O74857 DNA-directed RNA polymerase III subunit rpc4

1.3e-05

26.9

Show/hide

Query:  TYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPV-----TKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNEL-------PSGSMGKLLVYRSGAVKLK
        T  E M     D  +L + P+    F+    + PV      K+    E        +  K  R   N   L  L       P+G +G L V++SG   L+
Subjt:  TYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPV-----TKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNEL-------PSGSMGKLLVYRSGAVKLK

Query:  LGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPD
        +G + + V SG DC F Q++A ++ + K    +G   +R I++PD
Subjt:  LGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPD

P05423 DNA-directed RNA polymerase III subunit RPC4

1.1e-09

26.72

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Query:  ETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAA
        E  + FLQ+P  +          P+  +    +G V     E+ + ++  +N C+L +L  G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ +
Subjt:  ETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAA

Query:  INVEGK---HCCIVGELSKRAILTPDVDSML
        + +         ++G +  + + +PD +S+L
Subjt:  INVEGK---HCCIVGELSKRAILTPDVDSML

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

8.8e-10

25.5

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Query:  DESMTTPAMDLGLLEENPETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDI
        D S+     +L L +E     + FLQ+P  +          P+  +  + +G +     E+ + +R  +N C+L +L  G +GKLL+ +SG V+L LG +
Subjt:  DESMTTPAMDLGLLEENPETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDI

Query:  VYDVSSGMDCGFAQDVAAINVEGKH---CCIVGELSKRAILTPDVDSML
          DV+ G  C F Q++ ++ +         ++G +  + + +P+ +S+L
Subjt:  VYDVSSGMDCGFAQDVAAINVEGKH---CCIVGELSKRAILTPDVDSML

Q8T1V7 DNA-directed RNA polymerase III subunit rpc4

6.5e-05

32.05

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Query:  SLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEG-----KHCCIVGELSKRAILTPDVDSM
        S+ E+PSG +G L +Y+SG   LK+G + YD+SSG    F ++V     +G       C  +G  S+  +  P +  +
Subjt:  SLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEG-----KHCCIVGELSKRAILTPDVDSM

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

6.7e-10

26.17

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Query:  DESMTTPAMDLGLLEENPETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDI
        D S+     +L L+++     + FLQ+P  +          PV  +    +G +     E+ + +R  +N C+L +L  G +GKLL+ +SG V+L LG +
Subjt:  DESMTTPAMDLGLLEENPETNVFFLQIPPMV----------PVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDI

Query:  VYDVSSGMDCGFAQDVAAINVEGK---HCCIVGELSKRAILTPDVDSML
          DV+ G  C F Q++ ++ +         ++G +  + + +PD +S+L
Subjt:  VYDVSSGMDCGFAQDVAAINVEGK---HCCIVGELSKRAILTPDVDSML

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

7.8e-38

35.18

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Query:  AQRKMKFAPKAPPRRMP-KPEVKAEITEEADAAQAKDLLKRFNVCL--LSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNE-DGTLPSSI------
        ++R+ +  P  P RR+P  P    E  E+ +  +A     R  V     +   ++  +VAF    +   IRS+G+PK  ++P ++ + + P+SI      
Subjt:  AQRKMKFAPKAPPRRMP-KPEVKAEITEEADAAQAKDLLKRFNVCL--LSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNE-DGTLPSSI------

Query:  ------------------SKEYVEPWDY-YSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLE-ENPETNVFFLQIPPMVPVTK
                            +YVEPWDY  SYYP  LPLR+P SGD + L++EEFGE ++NR YDE+    A +LGL   ++ +  +F  +IP  +PV K
Subjt:  ------------------SKEYVEPWDY-YSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLE-ENPETNVFFLQIPPMVPVTK

Query:  QSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSM
        Q  T       S  E S G            LP G MGK+LVY+SGAVKLK+GD ++DVS G       DV AI+++G++C  +G  +K   +TPDV+S+
Subjt:  QSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSM

Query:  LKDIEDL
        L    D+
Subjt:  LKDIEDL

AT5G09380.1 RNA polymerase III RPC4

1.3e-56

45.55

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Query:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEE-ADAAQAKDLLKRFNVCLL---SFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGT
        MEQ PP       RKMKFAPKAPP+R+PKPEVK E+ E+ +++AQA +LL+R N   L         P       GG   + RS    K  NR     G+
Subjt:  MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEE-ADAAQAKDLLKRFNVCLL---SFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGT

Query:  LPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSE
          S+   EY EPWDYYSYYP+TLP+RRPY+GDP+ L+ EEF +A  +  +++S+ T A +LGL+E++ E  +FF+++P +   +  +  +E      +  
Subjt:  LPSSISKEYVEPWDYYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSE

Query:  QSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL
          KG    +    L  LP G MGKLLVY+SGAVK+KLG+++YDVS G+   FAQDV  +N E K+CC+VG++ K A+LTPD+DS+LKDIE++
Subjt:  QSKGSRTRQNFCSLNELPSGSMGKLLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

Sequences

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CDS sequence

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ATGGAGCAAGATCCGCCCAAGAACAATACAACTGCTCAACGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGAATGCCAAAACCTGAAGTCAAAGCAGAAATAAC
AGAGGAAGCTGATGCTGCTCAAGCCAAGGATTTACTAAAGCGCTTCAATGTATGTCTGCTTTCTTTTATTTTCTCCGCACCTACACAAGTTGCATTTGGTTCTGGAGGTA
CATCAGCAACCATAAGATCATATGGTATTCCAAAAGCTGGAAATAGACCCAGAAATGAAGATGGAACTCTTCCGTCTAGTATAAGCAAGGAGTATGTAGAACCATGGGAT
TATTACAGTTATTATCCTGTAACTCTTCCTTTGAGGAGACCATATTCAGGAGATCCAGATTCTCTTAACGAGGAAGAATTTGGAGAGGCTTCAGAAAACAGAACCTACGA
TGAAAGTATGACAACTCCAGCAATGGATCTTGGTCTATTGGAGGAGAATCCAGAAACAAATGTCTTTTTTCTACAAATACCACCTATGGTGCCAGTGACAAAGCAATCTT
CTACCGTAGAAGGCATGGTGGCAGCCAGCAGCTCAGAACAAAGTAAGGGTTCACGAACTCGTCAGAACTTCTGCTCTCTGAATGAGTTACCTTCTGGCTCCATGGGTAAA
TTGCTTGTATACAGGAGTGGTGCTGTCAAGTTGAAGCTAGGCGATATTGTATATGACGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGACGTTGCAGCTATCAATGT
GGAAGGGAAGCATTGCTGCATTGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACTCCAGATGTGGACTCGATGTTAAAGGATATCGAGGATTTATGA

mRNA sequence

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CCGGTTATTAATTTCGTAAGCGGCCACCTCCATCACGTAAAATTGCAGTTGCGCTGCGTCTCATTCACTATCAGAACAGGCAAAACCTTCTGCCGCCATTTTTTTTCTTC
TCAAACTCTTCTTCTTTCTTCATCGTTCCTATCGCAGCATCTCTGTGACTGTATCACATCATGCTGTAAACGAGCATTTTTCTCACTATCGTCAAGTTCATCGGCCGATT
CAATATATCGCTCGCTACTGCTCTGCTATTCGGGATCGCTTTCATTCAGGATTGCGCTGCTAAGTCCTATCTAGACGAAGGTTCAACAATTGATAGTCATGGAGCAAGAT
CCGCCCAAGAACAATACAACTGCTCAACGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGAATGCCAAAACCTGAAGTCAAAGCAGAAATAACAGAGGAAGCTGA
TGCTGCTCAAGCCAAGGATTTACTAAAGCGCTTCAATGTATGTCTGCTTTCTTTTATTTTCTCCGCACCTACACAAGTTGCATTTGGTTCTGGAGGTACATCAGCAACCA
TAAGATCATATGGTATTCCAAAAGCTGGAAATAGACCCAGAAATGAAGATGGAACTCTTCCGTCTAGTATAAGCAAGGAGTATGTAGAACCATGGGATTATTACAGTTAT
TATCCTGTAACTCTTCCTTTGAGGAGACCATATTCAGGAGATCCAGATTCTCTTAACGAGGAAGAATTTGGAGAGGCTTCAGAAAACAGAACCTACGATGAAAGTATGAC
AACTCCAGCAATGGATCTTGGTCTATTGGAGGAGAATCCAGAAACAAATGTCTTTTTTCTACAAATACCACCTATGGTGCCAGTGACAAAGCAATCTTCTACCGTAGAAG
GCATGGTGGCAGCCAGCAGCTCAGAACAAAGTAAGGGTTCACGAACTCGTCAGAACTTCTGCTCTCTGAATGAGTTACCTTCTGGCTCCATGGGTAAATTGCTTGTATAC
AGGAGTGGTGCTGTCAAGTTGAAGCTAGGCGATATTGTATATGACGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGACGTTGCAGCTATCAATGTGGAAGGGAAGCA
TTGCTGCATTGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACTCCAGATGTGGACTCGATGTTAAAGGATATCGAGGATTTATGATTATTTTCTCACAAGACAGGATTTT
TTTCATAGACATCAAGGAAGGAAAATTGGCGGGAATGATATTTTTTATTACAACCATGAGAGGATATAACAATAAAAGATAGCAGCAGAAAGAGAAGCACTGGTCCAGGA
AAAACAGAAGAGTGACTTTTTCCCCTCTTGTTCAGCCTGAGTGCCTAGATTTTTTAAATTATGAAACGTGTGATCAATTAGATAAATTATATTACATTAATTACAATTTG
ACGAGAAATAAATAACACTCTACTGAAGTCTCTTGTTAATTCTCCCTTTTGCTTATTTTGGTTATATTTCTTGAGCGTAATATGCCATTTGATATCTTAGCAAGCATTCA
GTGTCAATATATTGCACATGTAACCTGATTTTAGTGGGATCCACAGAAAATTGGTTTTGCATTCTTATCTTTCTATTTGTTTGGAAGTCAACTTACCTCACCCTCTCTGT
TTGTTTGGGGTGGAGCCAAAAATTTTGGAG

Protein sequence

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MEQDPPKNNTTAQRKMKFAPKAPPRRMPKPEVKAEITEEADAAQAKDLLKRFNVCLLSFIFSAPTQVAFGSGGTSATIRSYGIPKAGNRPRNEDGTLPSSISKEYVEPWD
YYSYYPVTLPLRRPYSGDPDSLNEEEFGEASENRTYDESMTTPAMDLGLLEENPETNVFFLQIPPMVPVTKQSSTVEGMVAASSSEQSKGSRTRQNFCSLNELPSGSMGK
LLVYRSGAVKLKLGDIVYDVSSGMDCGFAQDVAAINVEGKHCCIVGELSKRAILTPDVDSMLKDIEDL

MC06g0815 (gene) of Bitter gourd (Dali-11) v1 genome